View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2345_low_1 (Length: 752)

Name: NF2345_low_1
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2345_low_1
NF2345_low_1
[»] chr8 (1 HSPs)
chr8 (118-736)||(27843832-27844457)


Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 118 - 736
Target Start/End: Complemental strand, 27844457 - 27843832
Alignment:
Q  118 tatttctaaacagccatgaggatgagtatacaaaaatgaaattgatgaaatagaatgatcctttcaaagacactaaaaaggagtgcatgatctctacggt 217  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27844457 tatttctatatagctatgaggatgagtatacaaaaatgaaattgatgaaatagaatgatcctttcaaagagactaaaaaggagtgcatgatctctacggt 27844358  T
Q  218 ggaatttcagaaagcctacgatttggtaagttggagtttttgggattacatgctttaaagattcaacttcaatgaaaaatgaagaggttggatgagggct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27844357 ggaatttcagaaagcctacgatttggtaagttggagtttttgggattacatgctttaaagattcaacttcgatgaaaaatgaagaggttggatgagggct 27844258  T
Q  318 tctgtattttcggataatttgttggtattggcgaatgggattcccatggaagagatgaaaattagtagcgggcttatgcaaggtgatctgttagcaccct 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  27844257 tctgtattttcggataatttgttggtattggcgaatgggattcccatggaagagatgaaaattagtagcgggcttatgcaaggtgatctgttagtaccct 27844158  T
Q  418 tttgttttattggtggaagtctggaaaagaagtcaggggtttattggatattgaagtgcagttgggatattttatgggtatcatatacatgactcaaagg 517  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  27844157 tttgttttattggtggaagtctggaagagaggtcaggggtttattggatattgtggtgcagttgggatattttatgggtatcagatacatgactcaaagg 27844058  T
Q  518 tattg-------gtgagccatctacaatatgaagatgacccattatttattgcagaggcgtgcatggagtatttgttgtcaacgaaggctctccttaaat 610  Q
    |||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  27844057 tattggtgaatggtgagccatctacaatatgaagatgacccattatttattggagaggcgtgcatggagaatttgttgtcaacgaaggctctccttaaat 27843958  T
Q  611 cgtttaaattgatgtccggtttaaagattaatttttccnnnnnnngtcggttgtttaggtttaatgtcaaccaaaatttcttagaggttgcgacgggctt 710  Q
    | ||||||||||||| |||||||||| |||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27843957 catttaaattgatgttcggtttaaaggttaatttttccaaaaaaagtcggttgtttaggtttaatgtcaaccaaaatttcttagaggttgcgacgggctt 27843858  T
Q  711 cattaattgcaaggcagggaaatttc 736  Q
    |||||||||||||||| |||||||||    
T  27843857 cattaattgcaaggcatggaaatttc 27843832  T

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