View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_low_11 (Length: 267)
Name: NF2345_low_11
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 48138228 - 48138379
Alignment:
| Q |
18 |
aatcacctatgaattaaatctcatttatttatgctttaaaaaacgaagaatagattgcctaatttttaaatcatcaataaaataatgacaaaccttttta |
117 |
Q |
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| T |
48138228 |
aatcacccatgaattaaatctcatttatttatgctttaaaaaacgaagaataggatgcctaatttttaaatcatcaataaaataatgacaaaccttttta |
48138327 |
T |
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| Q |
118 |
ttttgaggtggcagagcgaaaatggtt-aaaaaaggaatattgaggtggcag |
168 |
Q |
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| T |
48138328 |
ttttgaggtggcagagcgaaaatggttaaaaaaagaaatattgaggtggcag |
48138379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 48138433 - 48138486
Alignment:
| Q |
214 |
atgtagatacgtatttctctcattgaagaataagctttgttgagtactcattca |
267 |
Q |
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| T |
48138433 |
atgtagatacgtatttctctcattgaagaataagctttgttcagtactcattca |
48138486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 25250924 - 25251043
Alignment:
| Q |
33 |
aaatctcatttatttatgctttaaaaaacgaagaatagattgcctaatttttaaatcatcaataaaataatgacaaacctttttattttgaggtggcaga |
132 |
Q |
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| T |
25250924 |
aaatctcatttatttatgctttaaaaaacgaagaataggatgcctaatttttaaatcatcaataaaataatgacaaa----------------tggcaga |
25251007 |
T |
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| Q |
133 |
gcgaaaatggttaaaaaaggaatattgaggtggcag |
168 |
Q |
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| T |
25251008 |
gcgaaaatggttaaaaaaggaatattgaggtggcag |
25251043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 216 - 263
Target Start/End: Original strand, 25251110 - 25251157
Alignment:
| Q |
216 |
gtagatacgtatttctctcattgaagaataagctttgttgagtactca |
263 |
Q |
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| T |
25251110 |
gtagatacgtatttctctcattgaagaataagctttgttcagtactca |
25251157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 25250754 - 25250785
Alignment:
| Q |
18 |
aatcacctatgaattaaatctcatttatttat |
49 |
Q |
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| T |
25250754 |
aatcacctatgaattaaatctcatttatttat |
25250785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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