View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_low_12 (Length: 254)
Name: NF2345_low_12
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 7640010 - 7640134
Alignment:
| Q |
115 |
aagggattcaatttattcatctaactttattcccaaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaa |
214 |
Q |
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| T |
7640010 |
aagggattcaaaatattcatctaactttattcccaaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaa |
7640109 |
T |
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| Q |
215 |
tggaatcagtttatatatagatatt |
239 |
Q |
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| T |
7640110 |
tggaatcagtttatatatagatatt |
7640134 |
T |
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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 7639921 - 7639980
Alignment:
| Q |
18 |
atcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
77 |
Q |
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| T |
7639921 |
atcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 7633288 - 7633375
Alignment:
| Q |
149 |
aaattaaatggcttcacctagttagaatgccaagactagtttattgagcatagacgacattgtgaatggaatcagtttatatatagatatt |
239 |
Q |
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| T |
7633288 |
aaattaaatggcttcacctagttggaatgccaatactagtttatggagcata---cacattctgaatggattcagtttatatatagatatt |
7633375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 7633204 - 7633263
Alignment:
| Q |
18 |
atcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
77 |
Q |
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| T |
7633204 |
atcaaaagccagttggaagctgtagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
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