View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_low_13 (Length: 240)
Name: NF2345_low_13
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_low_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 1066965 - 1067203
Alignment:
| Q |
19 |
attctagcatacaagtttgctcgtggagaaaccaatccatccgtggacaacaatactcaaggtctcaagcaacatagatacattatatagcagactccaa |
118 |
Q |
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| T |
1066965 |
attctagcatacaagtttgctcgtggagaaaccaatccatccgtggacaacaatactcaaggtctcaagcaacatagatacattatatagcagactccaa |
1067064 |
T |
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| Q |
119 |
atcacaaagtgacaccaagctattaaaaccatcatgtctcga-----------------catcgccaaaacgaaacataacattgtttaataaagaactt |
201 |
Q |
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| T |
1067065 |
atcacaaagtgacaccaaactattaaaaccatcatgtctcgacaatggttgctacaaaccatcgccaaaacgaaacataacattgtttaataaagaactt |
1067164 |
T |
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| Q |
202 |
caatggagtaaatttccaaccactatacatctgaaattt |
240 |
Q |
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| T |
1067165 |
caatggaataaatttccaaccactatacatctgaaattt |
1067203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 1064057 - 1064145
Alignment:
| Q |
21 |
tctagcatacaagtttgctcgtggagaaaccaatccatccgtggacaacaatactcaaggtctcaagcaacatagatacattatatagcagactcca |
117 |
Q |
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| T |
1064057 |
tctagcatacaagtttggtcatggaaaaaccaatccatctatggccaacaata--------ctcaagcaacataaatacattatatagcagattcca |
1064145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 33564477 - 33564420
Alignment:
| Q |
19 |
attctagcatacaagtttgctcgtggagaaaccaatccatccgtggacaacaatactc |
76 |
Q |
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| T |
33564477 |
attctagcatacaaatttgcacatggagaaatgaatccatccgtggccaacaatactc |
33564420 |
T |
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