View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_low_3 (Length: 434)
Name: NF2345_low_3
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 13793441 - 13793022
Alignment:
| Q |
1 |
ggatgagatagaggtgagtggcattagagtgcagacctgcaaattagttggcacaaccaatggcctcagaatcaaatcatggccagataagtatcctggt |
100 |
Q |
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| T |
13793441 |
ggatgagatagaggtgagtggcattagagtgcagacctgcaaattagttggcacaaccaatggcctcagaatcaaatcatggccagataagtatcctggt |
13793342 |
T |
|
| Q |
101 |
gcagcaacagatatcaagtacagtgacattacaatggaaaatgttaagaatcctatcatcattgaccaagagtatgaatgctctccaaattgcaaaaaga |
200 |
Q |
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| T |
13793341 |
gcagcaacagatatcaactacagtgacattacaatggaaaatgttaagaatcctatcatcattgaccaagagtatgaatgctctccaaattgcaaaaaga |
13793242 |
T |
|
| Q |
201 |
aggtttgtgtgttcatatttctctttatttttaattcattattacaatatgtgctaaaacatttaattcgatcaaccacctccatagaatttgctagttg |
300 |
Q |
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| T |
13793241 |
aggtttgtgtgttcatatttctctttatttttaattcattattacaatatgtgctaaaacatttaattcgatcaaccacctccatagaatttgctagttg |
13793142 |
T |
|
| Q |
301 |
tcattgaataaaacattgttccgttcctatcaaataaacgaaaccgttgttaact----gcataagatgagatatcctttttccttccttgcctttacac |
396 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13793141 |
tcattgaataaaacattgttccgctcctattaaataaacgaaaccgttgttaactgcatgcataagatgatatatcctttttccttccttgcctttacac |
13793042 |
T |
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| Q |
397 |
acattattgaagaaaattct |
416 |
Q |
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| T |
13793041 |
acattattgaagaaaattct |
13793022 |
T |
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