View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2345_low_5 (Length: 389)
Name: NF2345_low_5
Description: NF2345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2345_low_5 |
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| [»] chr3 (4 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 48139129 - 48138759
Alignment:
| Q |
18 |
attccgagatgaatagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataaccaacagataatttggcat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48139129 |
attccgagatgaatagtttgtagtcaataaatctttgacctttccaaattccgattgacgcctttcaatctgcaaaaataaccaacagataatttggcat |
48139030 |
T |
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| Q |
118 |
tccaattataaataaatagaaacaacaaatttagcactctttcaaatgaaaacatattctataaataattttacttgttaacatggaaataatgaactgt |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48139029 |
tccaattataa-taaatagaaacaacaaatttagcactctttcaaatgaaaacatattctataaataattttacttgttaacatggaaataatgaactgt |
48138931 |
T |
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| Q |
218 |
taaagtgaacaattgtgcgtatttttacatctctagttagcatttcatcatctctccatcacaaatacatttatttcaagaatctcacaatttcttacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48138930 |
taaagtgaacaattgtgcgtatttttacatctctagttagcatttcatcatctctccatcacaaatacatttatttcaagaatctcacaatttcttacta |
48138831 |
T |
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| Q |
318 |
atattaacaagttaaaacgaaaaaacattttagtaaatgacaatagaaaatatgacaatgttgcattgcatc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
48138830 |
atattaacaagttaaaacgaaaaaacattttagtaaatgacaatagaaaatacgccaatgttgcattgcatc |
48138759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 48125759 - 48125828
Alignment:
| Q |
30 |
atagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataac |
99 |
Q |
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||||||| ||| ||| ||| ||||||||||| |||||| |||||||||||||||| ||||||||||||| |
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| T |
48125759 |
atagtttctagccaaagaatttttgacctttctaaattcagattgacgcctttcaacctgcaaaaataac |
48125828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 48115685 - 48115760
Alignment:
| Q |
23 |
gagatgaatagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataa |
98 |
Q |
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||||| ||||| || |||||||||| ||||||| ||||||||||| |||||| ||| ||||| |||||||||||| |
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| T |
48115685 |
gagataaatagcttctagtcaataatcctttgacttttccaaattctgattgatgccgttcaacctgcaaaaataa |
48115760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 48135884 - 48135938
Alignment:
| Q |
41 |
tcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaa |
95 |
Q |
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| T |
48135884 |
tcaataaatctttgacctttccgaattctaattgacggctttcaacctgcaaaaa |
48135938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Complemental strand, 25251803 - 25251433
Alignment:
| Q |
18 |
attccgagatgaatagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataaccaacagataatttggcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25251803 |
attccgagatgaatagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataaccaacagataatttgacat |
25251704 |
T |
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| Q |
118 |
tccaattataaataaatagaaacaacaaatttagcactctttcaaatgaaaacatattctataaataattttacttgttaacatggaaataatgaactgt |
217 |
Q |
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|||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25251703 |
tccaataataa-taaatagaaacaacaaatttatcactgtttcaaatgaaaacatattctataaataattttacttgttaacatggaaacaatgaactgt |
25251605 |
T |
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| Q |
218 |
taaagtgaacaattgtgcgtatttttacatctctagttagcatttcatcatctctccatcacaaatacatttatttcaagaatctcacaatttcttacta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25251604 |
taaagtgaacaattgtgcgtatttttacatctctagttagcatttcatcatctctccatcacaaatacatttatttcaagaatctcacaatttcttacca |
25251505 |
T |
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| Q |
318 |
atattaacaagttaaaacgaaaaaacattttagtaaatgacaatagaaaatatgacaatgttgcattgcatc |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
25251504 |
atattaacaagttaaaacgaaaaaacattttagtaaatgacaatagaaaatacgccaatgttgcattgcatc |
25251433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 95
Target Start/End: Original strand, 25247862 - 25247916
Alignment:
| Q |
41 |
tcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaa |
95 |
Q |
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|||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| |
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| T |
25247862 |
tcaataaatctttgacctttccgaattctaattgacggctttcaacctgcaaaaa |
25247916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 32022365 - 32022296
Alignment:
| Q |
30 |
atagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataac |
99 |
Q |
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||||||| || ||||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
32022365 |
atagtttctactcaataattctttgacctttccgaattcagattgacgcctttcaacctgcaaaaataac |
32022296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 32010415 - 32010339
Alignment:
| Q |
23 |
gagatgaatagtttgtagtcaataaatctttgacctttccaaattcggattgacgcctttcaatctgcaaaaataac |
99 |
Q |
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|||||| || |||| || |||||| ||||||| ||| | |||||| |||||||||||||||| ||||||||||||| |
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| T |
32010415 |
gagatgcatcgtttctactcaatagttctttgaacttccgaaattcagattgacgcctttcaacctgcaaaaataac |
32010339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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