View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2346_high_2 (Length: 377)
Name: NF2346_high_2
Description: NF2346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2346_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 5 - 374
Target Start/End: Complemental strand, 43409216 - 43408847
Alignment:
| Q |
5 |
cagcgtgtaagccaaacatgttggcatggtgagcaagtggatattcagatttgctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaa |
104 |
Q |
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| T |
43409216 |
cagcgtgtaagccaaacatgttggcatggtgagcaagtggatattcagatttgctgaaggcagtaatatcaatagcaaaacaaggtttggttgttgtgaa |
43409117 |
T |
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| Q |
105 |
ggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataacaagctgaatca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409116 |
ggctgttcctactattccttgtccattaaaaaggtgatactcactgcacgcttcttggaatcccaatacatccatgtcaccaacataacaagctgaatca |
43409017 |
T |
|
| Q |
205 |
accgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatg |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43409016 |
accgttgatatgcagcaactcatagttgaaacaccacaacctgatgcaccactacttccctttcctcctccttgttgttgttgtaggcaaggagcccatg |
43408917 |
T |
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| Q |
305 |
ttagtgctaatggtaaattgtgcgtcttgcacactgaagccaacacttccattatctcgttcacggctgc |
374 |
Q |
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| T |
43408916 |
ttagtgctaatggtaaattgtgcgtcttgcacactgacgccaacacttccattatctcgttcaccgctgc |
43408847 |
T |
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