View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2346_low_2 (Length: 438)
Name: NF2346_low_2
Description: NF2346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2346_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 34109198 - 34109609
Alignment:
| Q |
12 |
attatactatattaagaaattcttaatagaaatctttaagaaactcttaagaaatgttaatgagttgactatgttatgagctgactatgttattgagttg |
111 |
Q |
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| T |
34109198 |
attatactatattaagaaattcttaatagacatctttaagaaactcttgagaaatgttaatgagttgactatgttatgagctgactatgttattgagttg |
34109297 |
T |
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| Q |
112 |
actatgctatgagctttcacacttgtggtctcttttttcttaattcttaataaattctgccaaaaataatagatttctttaatctttaattcgaaacaat |
211 |
Q |
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| T |
34109298 |
actatgttatgagctttcacacttgtggtctcttttttcttaattcttaataaattctgccaaaaataatagatttctttaatctttaattcgaaacaat |
34109397 |
T |
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| Q |
212 |
actagacaagaatttcctagaaactgcattctcatattatattag-----tttcattgattggaagaaagaaaaacctagagaaatcattgaactgaaaa |
306 |
Q |
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| T |
34109398 |
actagacaagaatttccttgaaactgcattctcatattatattagtttcatttcattgattggaagaaagaaaaacctagagaaatcattgaactgaaaa |
34109497 |
T |
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| Q |
307 |
gtttcttcatcaagaagggatgcaaccagtcacaaaccagatatccagttatggcaggagagttgattggaggggcatttcttggcgcagtggttcaaga |
406 |
Q |
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| T |
34109498 |
gtttcttcatcaagaggtgttg-atcccatttcatttc--atatccagttatggcaggagagttgattggaggggcatttcttggcgcagtggttcaaga |
34109594 |
T |
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| Q |
407 |
agggatgcaaccagt |
421 |
Q |
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| T |
34109595 |
agggatgcaaccagt |
34109609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 347 - 409
Target Start/End: Original strand, 34121379 - 34121441
Alignment:
| Q |
347 |
atatccagttatggcaggagagttgattggaggggcatttcttggcgcagtggttcaagaagg |
409 |
Q |
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| T |
34121379 |
atatccagttatggcaggagagttggttggaggggcatttcttggcgcagtggttcaagaagg |
34121441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 34121148 - 34121314
Alignment:
| Q |
104 |
ttgagttgactatgctatgagcttt-cacacttgtg-gtctctttttt--cttaattcttaataaattctgccaaaaataa-tagatttctttaatcttt |
198 |
Q |
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| T |
34121148 |
ttgagttgactatgttatgtgcttttcacacttgtaagtctatttttttccttaattcttaagaaattctgccaaaaataaataaacatctttaatcttt |
34121247 |
T |
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| Q |
199 |
aattcgaaacaatactagacaagaatttcctagaaactgcattctcatattatattagtttcattga |
265 |
Q |
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| T |
34121248 |
cactactagcattattagacaagaatttcctagaagctaccttttcatattatattagtttcattga |
34121314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 353
Target Start/End: Original strand, 34109589 - 34109626
Alignment:
| Q |
316 |
tcaagaagggatgcaaccagtcacaaaccagatatcca |
353 |
Q |
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| T |
34109589 |
tcaagaagggatgcaaccagtcacaaaccagatatcca |
34109626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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