View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2346_low_5 (Length: 228)
Name: NF2346_low_5
Description: NF2346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2346_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 6 - 209
Target Start/End: Complemental strand, 35742934 - 35742722
Alignment:
| Q |
6 |
cacttggacatcaaagacctagttgggactagtattttgtctaaacagtggaggtataagtggactaaagcgccacgactttggtttagtgatgactttt |
105 |
Q |
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| T |
35742934 |
cacttggacatcaaagacctagttgggactagtattttgtctaaacagtggaggtataagtggactaaagccccacgactttggtttagtgaggactttt |
35742835 |
T |
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| Q |
106 |
ttgaagagtacgagg---------atcttgatgatccagtagcttataagattatcacggatgttctcaagcaacacgaagggccgatagataagtttgg |
196 |
Q |
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| T |
35742834 |
ttgaagagtacgaggatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttgg |
35742735 |
T |
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| Q |
197 |
tcttttcatatct |
209 |
Q |
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||||||||||||| |
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| T |
35742734 |
tcttttcatatct |
35742722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 35749294 - 35749084
Alignment:
| Q |
8 |
cttggacatcaaagacctagttgggactagtattttgtctaaacagtggaggtataagtggactaaagcgccacgactttggtttagtgatgactttttt |
107 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| ||| | |||||||||| ||| ||| ||| |||| |||||||||| |||| |||| |||| |
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| T |
35749294 |
cttgtacatcaaagacctagttaggactagtattttgtcaaaaaattggaggtatatgtgaacttcagccccacaactttggtttggtgaagactatttt |
35749195 |
T |
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| Q |
108 |
gaagagtacgaggatcttga------tgatccagtagcttataagattatcacggatgttctcaagcaacacgaagggccgatagataagtttggtcttt |
201 |
Q |
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| T |
35749194 |
gacgagtacaaggatctcgattaccctggccctgtagcttctaaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttt |
35749095 |
T |
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| Q |
202 |
tcatatcttat |
212 |
Q |
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||||| ||||| |
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| T |
35749094 |
tcataccttat |
35749084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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