View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_high_11 (Length: 367)
Name: NF2347_high_11
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 348
Target Start/End: Complemental strand, 47101068 - 47100742
Alignment:
| Q |
18 |
ataaaaaggtgtacaataataaagaatacttcgattaattgaaaataagtgatatatacaattcaaaatttgaaaaagtagttttaaataaattttaaat |
117 |
Q |
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| T |
47101068 |
ataaaaaggtgtataataataaagaatacttcgattaa----aaataagtgatatatacaattcaaaatttgaaaaagtagttttaaataaattttaaat |
47100973 |
T |
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| Q |
118 |
attttgcttcaagagaaagatagtaattttaaataagggtcttgttaacgagtgctttgagacactctttaaactttgtgtggcaaataaatctggcata |
217 |
Q |
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| T |
47100972 |
attttgcttcaagagaaagatagtaattttaaataagggtcttgttaacgaatgttctgagacactctttaaactttgtgtggcaaataaatctggcata |
47100873 |
T |
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| Q |
218 |
tagagtccttggagcggattatagtttttgtgtggcaaataactaataatgggttgcttactaactctagaatggctaagtggagtttgagtgatcctta |
317 |
Q |
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| T |
47100872 |
tagagtccttggagcggattatagtttttgtgtggcaaataactaataatgggttgcttactaactctagaatggctaagtggagtttgagcgatcctta |
47100773 |
T |
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| Q |
318 |
ttgcaatcgttgtagtttttgggaagaaaca |
348 |
Q |
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| T |
47100772 |
gtgcaatcattgtagtttttgggaagaaaca |
47100742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 3027133 - 3027105
Alignment:
| Q |
144 |
ttttaaataagggtcttgttaacgagtgc |
172 |
Q |
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| T |
3027133 |
ttttaaataagggtcttgttaacgagtgc |
3027105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 28663286 - 28663240
Alignment:
| Q |
143 |
attttaaataagggtcttgttaacgagtgctttgagacactctttaa |
189 |
Q |
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| T |
28663286 |
attttatataagggtcttgttaacgagtgccctgaggcactctttaa |
28663240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 11533194 - 11533238
Alignment:
| Q |
148 |
aaataagggtcttgttaacgagtgcttt-gagacactctttaaac |
191 |
Q |
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| T |
11533194 |
aaataagggtcttgttaacgagtgttttcgggacactctttaaac |
11533238 |
T |
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