View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_high_13 (Length: 346)
Name: NF2347_high_13
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 42045707 - 42045386
Alignment:
| Q |
1 |
cctaactatacttcatatcactcatgcaaaccagaactagaattaattcaatataacacaccccaccaataccatgatgctaattttctccaacttccac |
100 |
Q |
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| T |
42045707 |
cctaactatacttcatatcactcatgcaaaccagaactagaattaattcaatataacacaccccaccaataccatgatgctaattttctccaacttccac |
42045608 |
T |
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| Q |
101 |
accttgaaagtccaaaaattactcaatctattatcccttataatcatcatgctcatgcaaacaataacaatattgcacttactcaacagatgcaatattc |
200 |
Q |
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| T |
42045607 |
accttgaaagtccaaaaattactcaatctattatcccttataatcatcatgctcatgcaaacaataacaatattgcacttactcaacagatgcaatattt |
42045508 |
T |
|
| Q |
201 |
gcagtaccatcaacaaaatcttcactcactttatggtggtaacaacagtactggcaatgatgaacaagttactgattggagagtgcttgacaagtttgtt |
300 |
Q |
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| T |
42045507 |
gcagtaccatcaacaaaatcttcactcactttatggtggtaacagcagtactggcaatgatgaacaagttactgattggagagtgcttgacaagtttgtt |
42045408 |
T |
|
| Q |
301 |
gcttctcaactaagtcatgaag |
322 |
Q |
| |
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|||||||| ||||||||||||| |
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| T |
42045407 |
gcttctcagctaagtcatgaag |
42045386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 12852831 - 12852891
Alignment:
| Q |
257 |
atgatgaacaagttactgattggagagtgcttgacaagtttgttgcttctcaactaagtca |
317 |
Q |
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| T |
12852831 |
atgatgatcaagttactgattggagagttcttgacaagtttgttgcttcacaacttagtca |
12852891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 8452248 - 8452303
Alignment:
| Q |
267 |
agttactgattggagagtgcttgacaagtttgttgcttctcaactaagtcatgaag |
322 |
Q |
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| T |
8452248 |
agttactgattggagagctcttgataagtttgtggcttctcaactgagtcacgaag |
8452303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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