View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2347_high_18 (Length: 250)

Name: NF2347_high_18
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2347_high_18
NF2347_high_18
[»] chr5 (10 HSPs)
chr5 (71-240)||(3413404-3413573)
chr5 (71-240)||(12919064-12919233)
chr5 (71-240)||(42729071-42729240)
chr5 (71-148)||(30580304-30580381)
chr5 (73-123)||(34738260-34738310)
chr5 (163-240)||(9335352-9335429)
chr5 (1-44)||(3412471-3412514)
chr5 (165-240)||(4694419-4694494)
chr5 (1-44)||(21680743-21680786)
chr5 (157-217)||(40821526-40821586)
[»] chr8 (10 HSPs)
chr8 (71-235)||(24220385-24220550)
chr8 (157-240)||(2268549-2268632)
chr8 (188-240)||(44246136-44246188)
chr8 (165-240)||(5064204-5064279)
chr8 (169-240)||(9907117-9907188)
chr8 (160-240)||(22226900-22226980)
chr8 (160-240)||(22233242-22233322)
chr8 (79-152)||(14393769-14393843)
chr8 (190-235)||(38657190-38657235)
chr8 (1-41)||(24219430-24219470)
[»] chr3 (7 HSPs)
chr3 (71-240)||(20628464-20628633)
chr3 (71-240)||(9331252-9331420)
chr3 (71-165)||(4644463-4644557)
chr3 (157-240)||(4506385-4506468)
chr3 (157-240)||(4501059-4501142)
chr3 (1-42)||(4643614-4643655)
chr3 (163-240)||(27900468-27900545)
[»] chr1 (7 HSPs)
chr1 (1-67)||(45619268-45619334)
chr1 (163-240)||(9315902-9315979)
chr1 (7-55)||(13432891-13432939)
chr1 (71-141)||(13431887-13431957)
chr1 (158-240)||(19329315-19329396)
chr1 (130-235)||(45620317-45620422)
chr1 (189-240)||(21814759-21814810)
[»] chr7 (4 HSPs)
chr7 (169-240)||(5222294-5222365)
chr7 (163-240)||(43364189-43364266)
chr7 (188-240)||(9701732-9701784)
chr7 (161-240)||(29865134-29865213)
[»] chr4 (4 HSPs)
chr4 (157-240)||(667870-667953)
chr4 (188-240)||(13567971-13568023)
chr4 (163-240)||(40976800-40976876)
chr4 (188-240)||(23543772-23543824)
[»] chr6 (7 HSPs)
chr6 (73-154)||(11015286-11015367)
chr6 (154-240)||(13105145-13105230)
chr6 (71-123)||(9846577-9846629)
chr6 (188-240)||(1051161-1051214)
chr6 (163-240)||(18765629-18765706)
chr6 (157-217)||(7825957-7826017)
chr6 (157-217)||(10800767-10800827)
[»] chr2 (5 HSPs)
chr2 (73-149)||(28145049-28145125)
chr2 (80-149)||(32738985-32739053)
chr2 (80-148)||(13162849-13162917)
chr2 (1-44)||(36842842-36842885)
chr2 (157-217)||(44611212-44611272)
[»] scaffold0012 (1 HSPs)
scaffold0012 (165-240)||(202342-202417)
[»] scaffold0291 (1 HSPs)
scaffold0291 (163-235)||(1917-1989)
[»] scaffold0265 (1 HSPs)
scaffold0265 (189-240)||(17999-18050)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-44)||(33665-33708)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 3413404 - 3413573
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacgat 170  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3413404 ttccaacgtttttacgccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaatgat 3413503  T
Q  171 atcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||| | ||||  ||||||||||| |||||||| ||||||||| || |||||||||||||| ||||    
T  3413504 atcgattgctgaatggcttagaatatcgcaccagtccatgtggagacgatgacaaaaatacttacttttg 3413573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 12919064 - 12919233
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacgat 170  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12919064 ttccaacgtttttacgccttattactccccgtttttatcttcgcaatttagtttccttcgttttaaacaaacaaccaatcaaactatagcttagaacgat 12919163  T
Q  171 atcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| ||||  ||||||||||  |||||||| ||||||||| ||||| ||||||||||| ||||    
T  12919164 atcgattgttgaatggcttagaatatcacaccagtccatgtggagacgataacgaaaatacttacttttg 12919233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 42729240 - 42729071
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacgat 170  Q
    ||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||    
T  42729240 ttccaacatttttatgccttattactctccgtatttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactataacttagaacaat 42729141  T
Q  171 atcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    || ||||||| ||||| ||||||||| | |||||||||||||||||| ||||||||||||||||| ||||    
T  42729140 attgattgttgaatgacttagaatattgcaccagtccctgtggagacgataacaaaaatacttacttttg 42729071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 30580304 - 30580381
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaa 148  Q
    |||||||| ||||||||||||||| ||| |||||||||||||| | |||||||  ||| |||||||||||||||||||    
T  30580304 ttccaacgcttttacaccttattaatcttcgtttttatcttcgtattttagttatcatagttttaaacaaacaaccaa 30580381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 34738310 - 34738260
Alignment:
Q  73 ccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtt 123  Q
    |||||| ||||||||||||| ||||||||| ||||| ||||||||||||||    
T  34738310 ccaacgcttttacaccttatcactctccgtgtttattttcgcaatttagtt 34738260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 9335352 - 9335429
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||| |||| ||||||| || |  ||||| ||||| |||||||||||||||||| |||||| |||||||||| ||||    
T  9335352 agaacaatatagattgttgaacggcttagattatcgcaccagtccctgtggagacgataacataaatacttacttttg 9335429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3412471 - 3412514
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaacaa 44  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  3412471 aagacttgaacaaatgaaagaaacacaaaaaggagcaaaaacaa 3412514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 4694419 - 4694494
Alignment:
Q  165 aacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||| ||| |||| || || |||||| |||| |||||||| |||| |||| ||||||||||||||||| ||||    
T  4694419 aacgataccgaatgttgaacgacttagaaaatcgcaccagtccttgtgaagacgataacaaaaatacttacttttg 4694494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21680786 - 21680743
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaacaa 44  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  21680786 aagacttgaacaaatgaaagaaacacaaaaaggagcaaaaacaa 21680743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 40821526 - 40821586
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagac 217  Q
    ||||| ||||||||||  |||||| || |  ||||||||||| ||||||||||||||||||    
T  40821526 tagctcagaacgatatgaattgttgaacggcttagaatatcgcaccagtccctgtggagac 40821586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 235
Target Start/End: Original strand, 24220385 - 24220550
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttt-tatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacga 169  Q
    |||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24220385 ttccaatgtttttacgccttattactctccgttttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacga 24220484  T
Q  170 tatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttac 235  Q
    ||||||||||| ||||  ||| ||||||| ||||||| || ||||||  |||| ||||||||||||    
T  24220485 tatcgattgttgaatggcttaaaatatcgcaccagtctctatggagatgataataaaaatacttac 24220550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 2268549 - 2268632
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||| ||||||||| |||||||| || |  ||||||||||| || ||||||| ||||||| ||||||||||||||||| ||||    
T  2268549 tagctcagaacgataccgattgttgaacggcttagaatatcgcactagtccctatggagacgataacaaaaatacttacttttg 2268632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 44246136 - 44246188
Alignment:
Q  188 ttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||||| ||||    
T  44246136 ttagaatatcgcaccagtccctgtggagacgataacataaatacttacttttg 44246188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 5064204 - 5064279
Alignment:
Q  165 aacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||| |||||||| || |  ||||||||||| |||| |||||||| |||| ||||||||||||||||| ||||    
T  5064204 aacgataccgattgttgaacggcttagaatatcgcaccaatccctgtgaagacgataacaaaaatacttacttttg 5064279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 9907117 - 9907188
Alignment:
Q  169 atatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||||| || |  ||| ||||||| |||||||| ||||||||| ||||||||||||||||| ||||    
T  9907117 atatcgattgttgaacggcttataatatcgcaccagtccatgtggagacgataacaaaaatacttacttttg 9907188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 22226980 - 22226900
Alignment:
Q  160 cttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaata-acaaaaatacttacctttg 240  Q
    |||||||||||||  |||||||||||  || |||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  22226980 cttagaacgatattaattgttaaatggctt-gaatatcgcactagtccctgtggagacgatacacaaaaatacttacttttg 22226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 22233322 - 22233242
Alignment:
Q  160 cttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaata-acaaaaatacttacctttg 240  Q
    |||||||||||||  |||||||||||  || |||||||| || ||||||||||||||| ||| |||||||||||||| ||||    
T  22233322 cttagaacgatattaattgttaaatggctt-gaatatcgcactagtccctgtggagacgatacacaaaaatacttacttttg 22233242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Complemental strand, 14393843 - 14393769
Alignment:
Q  79 tttttacaccttattactctccgtttttatcttcgcaattt-agtttccatcgttttaaacaaacaaccaatcaa 152  Q
    ||||||| |||||||||||||   ||||||||| | | ||| ||||||||| ||| |||||||||||||||||||    
T  14393843 tttttacgccttattactctcaacttttatctttgtatttttagtttccatagttataaacaaacaaccaatcaa 14393769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 38657235 - 38657190
Alignment:
Q  190 agaatatcgaaccagtccctgtggagacaataacaaaaatacttac 235  Q
    ||||||||| |||||| ||| || ||||||||||||||||||||||    
T  38657235 agaatatcgcaccagttcctatgaagacaataacaaaaatacttac 38657190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24219430 - 24219470
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaa 41  Q
    ||||||||||| ||||||||||||| ||||||||| |||||    
T  24219430 aagacttgaacaaatgaaagaaacacaaaaaggagcaaaaa 24219470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 20628464 - 20628633
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacgat 170  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||||    
T  20628464 ttccaacgtttttacgcctcattactctctgtttttatcttcgcaatttagtttccattgttttaaaaaaacaaccatccaaactatagcttagaacgat 20628563  T
Q  171 atcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| ||||  |||||||| || | |||| ||||||||||| ||||||||||||||||| ||||    
T  20628564 atcgattgttgaatggcttagaataccgcatcagtacctgtggagacgataacaaaaatacttacttttg 20628633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 9331252 - 9331420
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttagaacgat 170  Q
    |||||||||||||||  ||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||    
T  9331252 ttccaacgtttttacgtcttattactcttcatttttatcttcgcaatttagtttccatcgttttaaataaataaccaatcaaactataacttagaacgat 9331351  T
Q  171 atcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| ||||  ||||||||||| | |||| | | ||||||| || |||||||||||||| ||||    
T  9331352 atcgattgttgaatggcttagaatatcgcatcagt-catatggagacgatgacaaaaatacttacttttg 9331420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 4644463 - 4644557
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcttaga 165  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4644463 ttccaacgtttttacgccttattactctctgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaactatagcctaga 4644557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 4506468 - 4506385
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||||||||||| |||||||| || |  ||||||||||| |||| | ||||||||||  ||||||||||||||||| ||||    
T  4506468 tagcttagaacgataccgattgttgaacggcttagaatatcgcaccaattcctgtggagatgataacaaaaatacttacttttg 4506385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 4501142 - 4501059
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||| |||||||||  ||||||| || |  ||||||||||| || ||||| ||||||||| ||||||||||||||||| ||||    
T  4501142 tagctcagaacgatactgattgttgaacggcttagaatatcgcactagtccatgtggagacgataacaaaaatacttacttttg 4501059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4643614 - 4643655
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaac 42  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||    
T  4643614 aagacttgaacaaatgaaagaaacacaaaaaggagcaaaaac 4643655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 27900545 - 27900468
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| |||| || || |  ||||||||||| |||||||| |||||| || |||||| |||||||||| ||||    
T  27900545 agaacgatatagattattgaacggcttagaatatcgcaccagtccatgtggaaacgataacataaatacttacttttg 27900468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45619268 - 45619334
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaacaacaaatgtcgccacggcgggaatg 67  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  45619268 aagacttgaaccaatgaaagatacataaaaaggagcaaaaacaacaaatgtcgccacggcgggaatg 45619334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 9315979 - 9315902
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| ||||||| || || ||||||||||| | |||||||||||||||| |||||| |||||||||| ||||    
T  9315979 agaacgatatagattgttgaacgacttagaatatcgcatcagtccctgtggagacgataacataaatacttacttttg 9315902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 13432939 - 13432891
Alignment:
Q  7 tgaaccaatgaaagaaacataaaaaggagaaaaaacaacaaatgtcgcc 55  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  13432939 tgaaccaatgaaagaaacataaaaaggagcaaaaccaacaaatgtcgcc 13432891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 13431957 - 13431887
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaa 141  Q
    ||||||||||||||| |||||||||||||   ||||||||||||| | |||||| ||| ||||||||||||    
T  13431957 ttccaacgtttttacgccttattactctcaacttttatcttcgcattatagttttcatagttttaaacaaa 13431887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 19329396 - 19329315
Alignment:
Q  158 agcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| |||||||||||| || |  || |||||||| |||||||||||||||||| ||| ||||||||||||| ||||    
T  19329396 agcttagaacaatatcgattgttgaacggctt-gaatatcgcaccagtccctgtggagacgatagcaaaaatacttacttttg 19329315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 235
Target Start/End: Original strand, 45620317 - 45620422
Alignment:
Q  130 gttttaaacaaacaaccaatcaaactat-agcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaa 228  Q
    |||||||||||||||||||| || || | | |||||||||||||| |||||| || |  ||||||||||| | ||||||| |||||||  ||||||||||    
T  45620317 gttttaaacaaacaaccaattaatcttttaacttagaacgatatcaattgttgaacggcttagaatatcgcatcagtccc-gtggagatgataacaaaaa 45620415  T
Q  229 tacttac 235  Q
    |||||||    
T  45620416 tacttac 45620422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 21814810 - 21814759
Alignment:
Q  189 tagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| |||||||||||||||||| ||||| |||| |||||| ||||    
T  21814810 tagaatatcgcaccagtccctgtggagacgataactaaaaaacttacttttg 21814759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 5222365 - 5222294
Alignment:
Q  169 atatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||||| ||||  ||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  5222365 atatcgattgttgaatggcttagaatatcgcaccagtccctgtggagacgataacaaaaatacttacttttg 5222294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 43364266 - 43364189
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| ||||||| || |  ||||||||||| |||||||||||||||||| |||||| |||||||||| ||||    
T  43364266 agaacgatatagattgttgaacggcttagaatatcgcaccagtccctgtggagacgataacataaatacttacttttg 43364189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 9701784 - 9701732
Alignment:
Q  188 ttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  9701784 ttagaatatcgcaccagtccctgtggagataataacaaaaatacttacttttg 9701732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 29865134 - 29865213
Alignment:
Q  161 ttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaata-acaaaaatacttacctttg 240  Q
    |||||||||||||||||||| || || || |||||||| || ||||| ||||||||| ||| |||||||||||||| ||||    
T  29865134 ttagaacgatatcgattgttgaacgactt-gaatatcgcactagtccatgtggagacgatacacaaaaatacttacttttg 29865213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Original strand, 667870 - 667953
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||| |||||||||||||||||| || |  ||||||||||| | |||||||| ||||||||||||||||||||||||| ||||    
T  667870 tagctcagaacgatatcgattgttgaacggcttagaatatcgcatcagtccctatggagacaataacaaaaatacttacttttg 667953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 13568023 - 13567971
Alignment:
Q  188 ttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||| ||||    
T  13568023 ttagaatatcgcaccagtccctgtggagataataacaaaaatacttacttttg 13567971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 40976800 - 40976876
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| ||||||| || |  ||| ||||||| |||||||||||||||||  |||||| |||||||||| ||||    
T  40976800 agaacgatatagattgttgaacggctta-aatatcgcaccagtccctgtggagaagataacataaatacttacttttg 40976876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 23543772 - 23543824
Alignment:
Q  188 ttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||||||| |||||| ||||||||||| |||||| ||||| |||| ||||    
T  23543772 ttagaatatcgcaccagttcctgtggagacgataacataaatatttacttttg 23543824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 11015367 - 11015286
Alignment:
Q  73 ccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaatcaaac 154  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||    | ||||| |||||||||||||| ||||    
T  11015367 ccaacgcttttacaccttattactctcagtttttatcttcgcaatttagttctagtagttttcaacaaacaaccaattaaac 11015286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 13105230 - 13105145
Alignment:
Q  154 ctatagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||||||||||||||||| ||||||| ||    || |||||||  |||||||| ||||||||| ||||||||||||||||| ||||    
T  13105230 ctatagcttagaacgatattgattgttgaacagctt-gaatatcacaccagtccatgtggagacgataacaaaaatacttacttttg 13105145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 9846629 - 9846577
Alignment:
Q  71 ttccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtt 123  Q
    |||||||| |||||| |||||||| |||||||||||||||||| | |||||||    
T  9846629 ttccaacgcttttacgccttattaatctccgtttttatcttcgtattttagtt 9846577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 1051214 - 1051161
Alignment:
Q  188 ttagaatatcgaaccagtccctgtggagacaataac-aaaaatacttacctttg 240  Q
    ||||||||||| |||||||||| ||||||| ||||| |||||||||||| ||||    
T  1051214 ttagaatatcgcaccagtccctatggagacgataacaaaaaatacttacttttg 1051161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 18765706 - 18765629
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    ||||| |||| ||||||| || |  ||||||||||| || ||||||| ||||||| |||||| |||||||||| ||||    
T  18765706 agaacaatatagattgttgaacggcttagaatatcgcactagtccctatggagacgataacagaaatacttacttttg 18765629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 7826017 - 7825957
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagac 217  Q
    ||||| ||||||||||  |||||| || |  ||||||||||| ||||||||||||||||||    
T  7826017 tagctcagaacgatatgaattgttgaacggcttagaatatcgcaccagtccctgtggagac 7825957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 10800767 - 10800827
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagac 217  Q
    ||||| ||||||||||  |||||| || |  ||||||||||| ||||||||||||||||||    
T  10800767 tagctcagaacgatatgaattgttgaacggcttagaatatcgcaccagtccctgtggagac 10800827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 28145049 - 28145125
Alignment:
Q  73 ccaacgtttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaat 149  Q
    |||||| ||||||  ||||||||||| ||||||||||| ||||||||||||   || ||||||||||||||||||||    
T  28145049 ccaacgcttttacgtcttattactcttcgtttttatctccgcaatttagttctaatagttttaaacaaacaaccaat 28145125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 32739053 - 32738985
Alignment:
Q  80 ttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaat 149  Q
    |||||| ||||||| |||||| ||||||||||| ||||||||| || || ||||||||||||||| ||||    
T  32739053 ttttacgccttattgctctcc-tttttatcttcacaatttagtatctatagttttaaacaaacaatcaat 32738985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 13162917 - 13162849
Alignment:
Q  80 ttttacaccttattactctccgtttttatcttcgcaatttagtttccatcgttttaaacaaacaaccaa 148  Q
    |||||| |||||||||||||   |||||||||||||||||||||    | |||||||||||||||||||    
T  13162917 ttttacgccttattactctcaacttttatcttcgcaatttagttcttgtagttttaaacaaacaaccaa 13162849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36842885 - 36842842
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaacaa 44  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  36842885 aagacttgaacaaatgaaagaaacacaaaaaggagcaaaaacaa 36842842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 44611272 - 44611212
Alignment:
Q  157 tagcttagaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagac 217  Q
    ||||| ||||||||||  |||||| || |  ||||||||||| ||||||||||||||||||    
T  44611272 tagctcagaacgatattaattgttgaacggcttagaatatcgcaccagtccctgtggagac 44611212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 240
Target Start/End: Complemental strand, 202417 - 202342
Alignment:
Q  165 aacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||||||||| ||    ||||||| ||| |||||||||||||||||| |||||| |||||||||| ||||    
T  202417 aacgatatcgattgttgaaccgcttagaatgtcgcaccagtccctgtggagacgataacataaatacttacttttg 202342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 1917 - 1989
Alignment:
Q  163 agaacgatatcgattgttaaatgatttagaatatcgaaccagtccctgtggagacaataacaaaaatacttac 235  Q
    |||||||||| ||||||| || |  ||||||||||| |||||||| ||||||||| |||||| ||||| ||||    
T  1917 agaacgatatagattgttgaacggcttagaatatcgcaccagtccttgtggagacgataacataaatatttac 1989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 17999 - 18050
Alignment:
Q  189 tagaatatcgaaccagtccctgtggagacaataacaaaaatacttacctttg 240  Q
    |||||||||| |||||||||||||||||| ||||| |||| |||||| ||||    
T  17999 tagaatatcgcaccagtccctgtggagacgataactaaaaaacttacttttg 18050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 33665 - 33708
Alignment:
Q  1 aagacttgaaccaatgaaagaaacataaaaaggagaaaaaacaa 44  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  33665 aagacttgaacaaatgaaagaaacacaaaaaggagcaaaaacaa 33708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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