View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_high_20 (Length: 249)
Name: NF2347_high_20
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2479450 - 2479688
Alignment:
| Q |
1 |
tagctattcagcggcatcacaagtgaaataagtcatttcaaacacaggctcagttaatttgttagtttcatttttactgatgttaatattttctttgaaa |
100 |
Q |
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| T |
2479450 |
tagctatccagcggcatcacaagtgaaataagtcatttcaaacacaggctcagttaatttgttagttccatttttactgatgttaatattttctttgaaa |
2479549 |
T |
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| Q |
101 |
cacgttttgagaacagaagatgtattcaaagatcttgttgggagtgcatattatgttgctcctgaggtgttgcgtagaagctatggacctgaggctgata |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2479550 |
cactttttgagaacagaagatgtattcaaagatcttgttgggagtgcatattatgttgctcctgaggtgttgcgtagaagctatggacctgaagctgata |
2479649 |
T |
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| Q |
201 |
tttggagtgctgggattattttgtacattctcctctctg |
239 |
Q |
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| T |
2479650 |
tttggagtgctgggattattttgtacattctcctctctg |
2479688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 207
Target Start/End: Complemental strand, 41622614 - 41622535
Alignment:
| Q |
128 |
aaagatcttgttgggagtgcatattatgttgctcctgaggtgttgcgtagaagctatggacctgaggctgatatttggag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||| |||| | ||| ||||| ||||| ||||||||||||| |
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| T |
41622614 |
aaagatcttgttgggagtgcatattatgttgctcctgaagtgctgcgcaaaagttatgggcctgaaactgatatttggag |
41622535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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