View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_high_23 (Length: 244)
Name: NF2347_high_23
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 48 - 229
Target Start/End: Original strand, 51917757 - 51917939
Alignment:
| Q |
48 |
taaccagtcaaatactaaatttttatggaacataagtttaaaaaatagtttacactaaaattcatgctctcttttttaaattttagttactaatatttta |
147 |
Q |
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| T |
51917757 |
taaccagtcaaatactaaatttttatggaacataagtttaaaaaatagtttacactaaaattcatgctctcttttttaaattttagttactaatatttta |
51917856 |
T |
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| Q |
148 |
gttattaaattttgctagg-ttggtaataattcccatttcatcacgttgattatgtagctatacaagacacccataatagaat |
229 |
Q |
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| T |
51917857 |
gttattaaattttcctaggcttggtaataattcccatttcatcacgttgattatgtagctatacaagacacccataatagaat |
51917939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 16456659 - 16456630
Alignment:
| Q |
1 |
ttataattagggacggagggagtaacattt |
30 |
Q |
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| T |
16456659 |
ttataattagggacggagggagtaacattt |
16456630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 26593779 - 26593809
Alignment:
| Q |
1 |
ttataattagggacggagggagtaacatttt |
31 |
Q |
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| T |
26593779 |
ttataattagggacggagggagtaacatttt |
26593809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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