View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_high_31 (Length: 204)
Name: NF2347_high_31
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 46324359 - 46324532
Alignment:
| Q |
13 |
agcataggaaatcagtaatcacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacgcgattctt |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46324359 |
agcagaggaaatcagtaatcacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacacgattctt |
46324458 |
T |
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| Q |
113 |
agtagttgcatgtgttgtatatttacaacagttgttcacttgtactctatccacttaatgctagatatggatct |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46324459 |
agtagttgcatgtgttgtatatttacaacagttgttcacttctactctatccacttaatgctagatatggatct |
46324532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 46522630 - 46522511
Alignment:
| Q |
13 |
agcataggaaatcagtaatcacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacgcgattctt |
112 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||| ||| |||| ||||||| | || ||||| |
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| T |
46522630 |
agcagaggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttcccggttctt |
46522531 |
T |
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| Q |
113 |
agtagttgcatgtgttgtat |
132 |
Q |
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| T |
46522530 |
agtagttgcgtgtgttgtat |
46522511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 46530063 - 46529944
Alignment:
| Q |
13 |
agcataggaaatcagtaatcacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacgcgattctt |
112 |
Q |
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| T |
46530063 |
agcagaggaaataagtaatcacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttccgggttctt |
46529964 |
T |
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| Q |
113 |
agtagttgcatgtgttgtat |
132 |
Q |
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||||||||| |||||||||| |
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| T |
46529963 |
agtagttgcgtgtgttgtat |
46529944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 46328796 - 46328844
Alignment:
| Q |
18 |
aggaaatcagtaatcacatttatgaattcatcaagaagttctgagctga |
66 |
Q |
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| T |
46328796 |
aggaaatcagtaattacatttacgaattcatcatgaagttctgagctga |
46328844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 46519283 - 46519235
Alignment:
| Q |
18 |
aggaaatcagtaatcacatttatgaattcatcaagaagttctgagctga |
66 |
Q |
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| T |
46519283 |
aggaaattagtaatcacatttacgaattcatcaagaaattctgagctga |
46519235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 46481467 - 46481424
Alignment:
| Q |
18 |
aggaaatcagtaatcacatttatgaattcatcaagaagttctga |
61 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
46481467 |
aggaaatcagtaatcacatttatgattttatcaagaagttctga |
46481424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 170
Target Start/End: Original strand, 7476508 - 7476641
Alignment:
| Q |
35 |
atttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacgcgattcttagtagttgcatgtgttgtatat |
134 |
Q |
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||||||||||||||||| |||||||||||||| ||| | ||||||||| ||| |||||||||| | | | |||||||||||||| ||||| | ||| |
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| T |
7476508 |
atttatgaattcatcaaaaagttctgagctgatctgctaatgaaataatcttgctgctaagtctaattcctggttcttagtagttgcgtgtgt--tctat |
7476605 |
T |
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| Q |
135 |
ttacaacagttgttcacttgtactctatccacttaa |
170 |
Q |
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||| |||| ||||||||||||| | |||||| |||| |
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| T |
7476606 |
ttagaacaattgttcacttgtaatatatccatttaa |
7476641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 7493195 - 7493331
Alignment:
| Q |
32 |
cacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtctattacgcgattcttagtagttgcatgtgttgta |
131 |
Q |
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|||||||||||||||||||| |||||||||||||| ||| ||||||||| ||| |||||||||| | | | |||||||||||||| ||||| | |
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| T |
7493195 |
cacatttatgaattcatcaaaaagttctgagctgatctgcaaatgaaataatcttgctgctaagtctaattcctggttcttagtagttgcgtgtgt--tc |
7493292 |
T |
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| Q |
132 |
tatttacaacagttgttcacttgtactctatccacttaa |
170 |
Q |
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|||||| |||| ||||||||||||| | |||||| |||| |
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| T |
7493293 |
tatttagaacaattgttcacttgtaatatatccatttaa |
7493331 |
T |
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