View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_high_9 (Length: 393)
Name: NF2347_high_9
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 28409154 - 28408749
Alignment:
| Q |
1 |
atatgggatttcattcgacaaaatttacaactttcaattatcagtccctcataacaagaggctttgtggttcgagtcatggttggctagcaaagatggat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28409154 |
atatgggatttcattcgacaaaatttacaactttcaattatcagtccctcataacaagaggctttgtggttcgagtcatggttggctagcaaagatggat |
28409055 |
T |
|
| Q |
101 |
attactattagttcaagacttgcaactataaccctacttaatcccttcaacaatatagcttccatcattctaccaaccatctacatgacgcata------ |
194 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
28409054 |
attactattagttccagacttgcaactataaccctacttaatcccttcaacaatatagcttccatcattctaccaaccatctacatgaagaatatgcttg |
28408955 |
T |
|
| Q |
195 |
ca---------cttggaggaggtagatcagttcctgaacgtaatgttcataaggttattttgtcat------------ctaatccacgtgattatgttgt |
273 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28408954 |
caaagaatatgcttggaggaggtagatcagttcctgaacgtaatgttcataaggttattttgtcatctaatcctacaactaatccacgtgattatgttgt |
28408855 |
T |
|
| Q |
274 |
tgtagcaatttatggtgggcgtgcatgtcttgctttcatgaaagcgggagaaaattgttggactcatattgatccttaccatcattgcttcaccgatgtt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28408854 |
tgtagcaatttatggtgggcgtgcatgtcttgctttcatgaaagcaggagaaaattgttggactcatattgatccttaccatcattgcttcaccgatgtt |
28408755 |
T |
|
| Q |
374 |
atattt |
379 |
Q |
| |
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|||||| |
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|
| T |
28408754 |
atattt |
28408749 |
T |
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Back To:
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 8467405 - 8467226
Alignment:
| Q |
1 |
atatgggatttcattcgacaaaatttacaactttcaattatcagtccctcataacaagaggctttgtggttcgagtcatggttggctagcaaagatggat |
100 |
Q |
| |
|
|||||||||||||| | |||||||||| ||| || || || ||||| |||||||||||||| ||||||| |||||||||||| |||||||| |||| |
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| T |
8467405 |
atatgggatttcatccagcaaaatttaccgcttccagctaccactcccttataacaagaggctt-gtggttcaagtcatggttgggtagcaaaggtgga- |
8467308 |
T |
|
| Q |
101 |
attactattagttcaagacttgcaactataaccctacttaatcccttcaacaatatagcttccatcattctaccaaccatctacatg |
187 |
Q |
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| ||| ||| | |||| ||| ||||||||||| ||||||||||| ||| ||| ||| ||| ||||||| ||||||||||| |
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| T |
8467307 |
-----ttttatttcgaaacttacaatcataaccctactaaatcccttcaaaaatctagtttcgatccctctaccacccatctacatg |
8467226 |
T |
|
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