View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_low_15 (Length: 316)
Name: NF2347_low_15
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 9698664 - 9698968
Alignment:
| Q |
1 |
acccgcgtaggaaaaagctcagcgggcaacacaaaagttgtactattaggcccaaagttcgcgaagaagaatgttagcccgtataaaagagcgaagaggt |
100 |
Q |
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| T |
9698664 |
acccgcgtaggaaaaagctcagcgggcaacacaaaagttgtactattaggcccaaagttcgcgaagaagaatgttagcccgtataaaagagcgaagaggt |
9698763 |
T |
|
| Q |
101 |
ttttgttttcgtctttcaagtattcatatttaacaccaatgacaaacatgaagaaagacatcatgaagaaaccaaccaactgtatcttgaatcttccaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9698764 |
ttttgttttcgtctttcaagtattcatatttaacaccaatgacaaacatgaagaaagacatcatgaagaaaccaaccaactgtatcttgaatcttccaag |
9698863 |
T |
|
| Q |
201 |
cttttcaatgaagaaaacagtgaaccaataaccggggaatgttccaaacaaggcgacaacaaacatggcgcgcgaagtttggaaaacttcatcaatagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9698864 |
cttttcaatgaagaaaacagtgaaccaataaccggggaatgttccaaacaaggcgacaacaaacatggcgcgcgaagtttggaaaacttcatcaatagca |
9698963 |
T |
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| Q |
301 |
ttcat |
305 |
Q |
| |
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||||| |
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| T |
9698964 |
ttcat |
9698968 |
T |
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