View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_low_16 (Length: 300)
Name: NF2347_low_16
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 283
Target Start/End: Original strand, 1345158 - 1345431
Alignment:
| Q |
10 |
gtaaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgc |
109 |
Q |
| |
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|||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1345158 |
gtaaattatattaaacatgcatgcttttaaaacagtcctgcactgaggagaccattttctatctaaaatcttcaaaaaatcaaaacagttggcgaattgc |
1345257 |
T |
|
| Q |
110 |
atgtttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaa |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1345258 |
atgtttatgtttataatagagagcagccagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacagaatattataaa |
1345357 |
T |
|
| Q |
210 |
aagagaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatc |
283 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
1345358 |
aagagcaccatgatggaaactgaaaacctctagacaaaagattttcctctaatggaactttgttatgcaagatc |
1345431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 31136184 - 31135915
Alignment:
| Q |
10 |
gtaaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgc |
109 |
Q |
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|||||| ||| |||||| ||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31136184 |
gtaaattatattaaacatgcaagcttttagaacagtcctgcactgaggagaccagtttctatccaaaatcttcaaaaaatcaaaacagttggtgaattat |
31136085 |
T |
|
| Q |
110 |
atgtttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaa |
209 |
Q |
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||||||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| || |
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| T |
31136084 |
atgtttatgtttatagtagagagcaaccagttccacagatgcatagcaaaagaccactcaaaaaataagtggaaggtagattcacacaagatattgcaag |
31135985 |
T |
|
| Q |
210 |
aagagaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaa |
279 |
Q |
| |
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||||| || ||||||||| |||||||| || ||||||| |||||| ||| ||| |||||||||||||| |
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| T |
31135984 |
aagagcactgtgatggaaattgaaaacccctggacaaaagattttcctctgttggcactttgttatgcaa |
31135915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 7577956 - 7577785
Alignment:
| Q |
23 |
aacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgttta |
122 |
Q |
| |
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|||| ||||||||| | || ||||||||||| ||||||| ||||| ||||||| |||||||| |||| ||| || |||||||||||||| |||| |
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| T |
7577956 |
aacatgcatgctttcaggacggtcctgcactgcggagaccagtttctctccaaaagattcaaaaagtcaagacacgtgataaattgcatgtttatattta |
7577857 |
T |
|
| Q |
123 |
taatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac |
194 |
Q |
| |
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|| ||||| || | || |||||||||||||||||||| || |||||||| ||||||||||||| ||||| |
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| T |
7577856 |
aaaaagagaacaacccgtaccacaaatgcatagcaaaaggacattcaaaaaataagtggaaggtagtttcac |
7577785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 283
Target Start/End: Complemental strand, 14722725 - 14722453
Alignment:
| Q |
11 |
taaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgca |
110 |
Q |
| |
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||||| ||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| |||| |
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| T |
14722725 |
taaattatattaaacatgcatgcttttaaaacagtcctgcactgaagagaccaatttctatccaaaattttcaaaaaatcaaaacagttggtgaactgca |
14722626 |
T |
|
| Q |
111 |
tgtttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataaaa |
210 |
Q |
| |
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| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |
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| T |
14722625 |
tttttatgtttataatagagagaagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacagaatattacaaga |
14722526 |
T |
|
| Q |
211 |
agagaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatgcaagatc |
283 |
Q |
| |
|
| || |||||||||||| |||||||||||| ||||||| ||||| |||| |||||||||||||||||||||| |
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| T |
14722525 |
aaagcaccatgatggaagctgaaaacctctggacaaaagatttttatctgttggaactttgttatgcaagatc |
14722453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 28185115 - 28185299
Alignment:
| Q |
10 |
gtaaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgc |
109 |
Q |
| |
|
|||||||||| | |||| ||| ||||| | ||||||||||||| | ||||||| |||||||| | ||||||| |||| || | ||| ||| ||||||| |
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|
| T |
28185115 |
gtaaataatattgaacatgcaagctttgagaacagtcctgcaccgcggagaccaatttctatctagaatcttccaaaagtctagacaattgctgaattgc |
28185214 |
T |
|
| Q |
110 |
atgtttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac |
194 |
Q |
| |
|
||| ||||||| ||||| ||| || || |||||||||||||||||||||| |||||||||||||||||||| |||| ||||| |
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| T |
28185215 |
atgcttatgttagtaatatagaacaaccaattccacaaatgcatagcaaaaggacactcaaaaaacaagtggaaagtagtttcac |
28185299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 12219281 - 12219431
Alignment:
| Q |
44 |
gtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgcatgtttatgtttataatagagagcagtcagttcc |
143 |
Q |
| |
|
||||||||||| || |||| ||||| ||||||| |||||||| |||| ||| || |||||||||||||| |||| |||||||| || ||||||| |
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| T |
12219281 |
gtcctgcactgcggataccagtttctctccaaaagattcaaaaagtcaagacacgtgataaattgcatgtttatatttaaaatagagaacaaccagttcc |
12219380 |
T |
|
| Q |
144 |
acaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcac |
194 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||||||||||| ||||| |
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|
| T |
12219381 |
acaaatgcatagcaaaaggacattcaaaaaataagtggaaggtagtttcac |
12219431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 34661235 - 34660968
Alignment:
| Q |
10 |
gtaaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaa-tcaaaacagttggcgaattg |
108 |
Q |
| |
|
|||||| ||| |||||| ||| ||||||| ||||||||| |||| | ||||||| |||||||||||||||||||||||| |||||||| |||| |||||| |
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|
| T |
34661235 |
gtaaattatattaaacatgcaagcttttagaacagtcctacactaaggagaccagtttctatccaaaatcttcaaaaaaatcaaaacaattggtgaattg |
34661136 |
T |
|
| Q |
109 |
catgtttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtggaaggtagattcacacataatattataa |
208 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || || || |
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|
| T |
34661135 |
tatgtttatgtttatagtagagagcaaccagttccacagatgcatagcaaaagagcactcaaaaaataagtggaaggtagattcacacaagatgttgcaa |
34661036 |
T |
|
| Q |
209 |
aaagagaaccatgatggaaactgaaaacctctagacaaaatattttcatctaatggaactttgttatg |
276 |
Q |
| |
|
||||| || ||||||||| |||||||| || ||||| | |||||||| | ||| ||||||||||| |
|
|
| T |
34661035 |
gaagagcactgtgatggaaattgaaaacccctggacaagagattttcatttgttggcactttgttatg |
34660968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 18254285 - 18254338
Alignment:
| Q |
10 |
gtaaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagacca |
63 |
Q |
| |
|
|||||| ||| | |||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
18254285 |
gtaaattatattgaacatgcaagcttttaaaacagtcctgcactgaggagacca |
18254338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 7705161 - 7704989
Alignment:
| Q |
10 |
gtaaataatactaaacaagcatgcttttaaaacagtcctgcactgaagagaccattttctatccaaaatcttcaaaaaatcaaaacagttggcgaattgc |
109 |
Q |
| |
|
|||||| ||| |||||| ||| ||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
7705161 |
gtaaattatattaaacatgcaagcttttagaacagtcctgcactgaggagaccggtttctatccaaaatcttcaaaaaatcagaacagttggtgaatttt |
7705062 |
T |
|
| Q |
110 |
atgtttatgtttataatagagagcagtcagttccacaaatgcatagcaaaagagcactcaaaaaacaagtgga |
182 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||| |
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|
| T |
7705061 |
gtgtttatgtttataatagagagcaaccagttccatagatgcatagcaaaagagcactcaaaaaataagtgga |
7704989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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