View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_low_2 (Length: 635)
Name: NF2347_low_2
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_2 |
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| [»] scaffold1152 (1 HSPs) |
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Alignment Details
Target: scaffold1152 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: scaffold1152
Description:
Target: scaffold1152; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 14 - 635
Target Start/End: Complemental strand, 2261 - 1634
Alignment:
| Q |
14 |
ctttcatcttcttcttgttcttcgcaatccaaaaccaagaaattaggttcctcttcctccattcatcctctccttcaagttccctcttatctccctctgc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2261 |
ctttcatcttcttcttgttcttcgcaatccaaaaccaagaaattaggttcctcttcctccattcatcctctccttcaagttccctcttatctccctctgc |
2162 |
T |
|
| Q |
114 |
aaaatcgaatcctcttctgcaaaatctaaatcaaaatt------gaatccctcttcnnnnnnncaagttcgttctttatgatttctaattgaatcctcta |
207 |
Q |
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||||| |||||||||| ||||||||| |||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
2161 |
aaaattgaatcctcttatgcaaaatcaaaatcaaaatcaaaatcgaatccttcttctttttttcaagttcgttcttcatgatttttaattgaatcctcta |
2062 |
T |
|
| Q |
208 |
tgtaagagagaaaatacagtggaaggacgatgtgttggtgttttcttgaggttaccagaaagctttaacaatccaagcttatacattctctcagcgttct |
307 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2061 |
tataagagagaaaatacggtggaaggacgatgtgttggtgttttcttgaggttaccagaaagctttaacaatccaagcttatgcattctctcagcgttct |
1962 |
T |
|
| Q |
308 |
ctttcatcctttgttccctaatctgttcgtaatatgatgatgaacccaaaacgacaacacctttgtcactgtcagttttcgccgttttggtttcggtggt |
407 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1961 |
ctttcatcctttgttccctaatctattcgtaatatgatgatgaacccaaaactacaacacctttgtcaccgtcagttttcgccgttttggtttcggtggt |
1862 |
T |
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| Q |
408 |
ggctgagctgccatcttcaccgtcagaagaagctgattcttcttcggttctccttcgacgacgagttcccattctcacacactctctctgttgttttctc |
507 |
Q |
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| T |
1861 |
ggctgggctgccatcttcacggttagaagaagttgattcttcttcggttctccttcgacgacgagttcccattctcacacactctctctgttgttttctt |
1762 |
T |
|
| Q |
508 |
ttgtcacnnnnnnnnagtgagtttctgaatcggttttctttatttaaaattgaacagttgtttatggattgatggtggtggaagaatagtgatgagatga |
607 |
Q |
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| T |
1761 |
atgtcacttttttttagtgagtttctgaatcggttttctttatttaaaattgaacagttgtttatggattgatggtggtggaagaatagtgatgagatga |
1662 |
T |
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| Q |
608 |
tggtgcggatgggtatatggtgatgatg |
635 |
Q |
| |
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| T |
1661 |
tggtgcggatgggtataaggtgatgatg |
1634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 7e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 242 - 506
Target Start/End: Complemental strand, 34199841 - 34199576
Alignment:
| Q |
242 |
ttggtgttttcttgaggttaccagaaagctttaacaatccaagcttatacattctctcagcgttctctttcatcctttgttccctaatctgttcgtaata |
341 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34199841 |
ttggtgttttcttgaggttaccagaaagctttaacaaaccaagcttatgcattctctcagcgttctcttccatcctttgttccctaatccgttcgtaatg |
34199742 |
T |
|
| Q |
342 |
tgatgatgaacccaaaacgacaacacctttgtcactgtcagttttcgccgttttggtttcggtggtggctgagctgccatcttcaccgtcagaagaagct |
441 |
Q |
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||||||||||| ||||||||||||||| ||||| || ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
34199741 |
cgatgatgaacctgaaacgacaacaccttcgtcaccgttagttttctccgttttggtttcggtggtggctgcgccgccatcttcaccgtcagaagaagct |
34199642 |
T |
|
| Q |
442 |
gattctt---cttcggttctccttcgacgacgagttcccattctcacacactctctctgttgttttct |
506 |
Q |
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| T |
34199641 |
gattcttcttcttcgcttctccttctacgacgagttcccattctctcaca--ctctctgttgttttct |
34199576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 321 - 506
Target Start/End: Complemental strand, 40812248 - 40812065
Alignment:
| Q |
321 |
ttccctaatctgttcgtaatatgatgatgaacccaaaacgacaacacctttgtcactgtcagttttcgccgttttggtttcggtggtggctgagctgcca |
420 |
Q |
| |
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|||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
40812248 |
ttccctaatctgttcgtaatgtgatgatgaaccagaaacggcaacaccttcgtcaccgtcagttttcgccgttttggtttcgttggtggttgcgctgcca |
40812149 |
T |
|
| Q |
421 |
tcttcaccgtcagaagaagctgattcttcttcggttctccttcgacgacgagttcccattctcacacactctctctgttgttttct |
506 |
Q |
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| T |
40812148 |
tcttcaccgtcagaagaagctgattcttcttcggttctccttcgacgacgagttcccattctcacacact--ctctgttgttttct |
40812065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 40812388 - 40812269
Alignment:
| Q |
20 |
tcttcttcttgttcttcgcaatccaaaaccaagaaattagg---------ttcctcttcctccattcatcctctccttcaagttccctcttatctccctc |
110 |
Q |
| |
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||||| |||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
40812388 |
tcttcctcttcttctttgcaatccaaaacccagaaattagggttcctcagttcctcttcctccattcatcctctccttcaagttccctcttctctccttc |
40812289 |
T |
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| Q |
111 |
tgcaaaatcgaatcctcttc |
130 |
Q |
| |
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| T |
40812288 |
tccaaaatcgaatccacttc |
40812269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 20538260 - 20538322
Alignment:
| Q |
65 |
tcttcctccattcatcctctccttcaagttccctcttatctccctctgcaaaatcgaatcctcttct |
131 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
20538260 |
tcttcctccattcaccctctctttcaagttccctct----tctctctgcaaaatcgaatcctcttct |
20538322 |
T |
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