View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_low_23 (Length: 246)
Name: NF2347_low_23
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 45144801 - 45144682
Alignment:
| Q |
1 |
aacaaatgctccattttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaatttt |
100 |
Q |
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| T |
45144801 |
aacaaatgctccattttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaatttt |
45144702 |
T |
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| Q |
101 |
gtcataatatattatgcaag |
120 |
Q |
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|||||||||||||||||||| |
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| T |
45144701 |
gtcataatatattatgcaag |
45144682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 45144616 - 45144558
Alignment:
| Q |
186 |
ctactatagagaaaatacaaaggattgaattagagacatatatagggtacctttgcttc |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45144616 |
ctactatagagaaaatacaaaggattgaattagagacatatatagggtacctttgcttc |
45144558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12701336 - 12701432
Alignment:
| Q |
1 |
aacaaatgctccattttcggcgaacaatttcactgtttcttcaccaattccactggctgcacctgttattattgccaccttaccctccaacctaaat |
97 |
Q |
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||||||||||||||||||| ||||||| ||||||| |||| ||||||||||||||||||||| || || ||||| | ||||||||| ||||||||| |
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| T |
12701336 |
aacaaatgctccattttcgacgaacaacttcactgcgtctttaccaattccactggctgcaccagtgatgattgctatcttaccctctaacctaaat |
12701432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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