View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_low_27 (Length: 239)
Name: NF2347_low_27
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 43069526 - 43069647
Alignment:
| Q |
1 |
tggataaaggtggaaatgttagtagtagttt----gttaggtagaaggaaaaggaagtagcacactggttgaatcctgcatgcacctccggcatatataa |
96 |
Q |
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| T |
43069526 |
tggataaaggtggaaatgttagtagtagtttgtttgttaggtagaaggaaaaggaagtagcacactggttgaatcc----tgcacctccggc----ataa |
43069617 |
T |
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| Q |
97 |
aactcgttcgtaagctagtttatgccatca |
126 |
Q |
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| T |
43069618 |
aactcgttcgtaagctagtttatgccatca |
43069647 |
T |
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Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 43070153 - 43070211
Alignment:
| Q |
165 |
atatgttaactcttgtgtacatcatttgttaaaataaattatatatattgggaggaagg |
223 |
Q |
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| T |
43070153 |
atatgttaactcttgtgtacatcatttgttaaaataaattatatatattgggaggaagg |
43070211 |
T |
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