View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2347_low_29 (Length: 236)

Name: NF2347_low_29
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2347_low_29
NF2347_low_29
[»] chr7 (5 HSPs)
chr7 (131-221)||(15660143-15660233)
chr7 (100-221)||(18846372-18846506)
chr7 (131-222)||(47790403-47790494)
chr7 (100-138)||(15660099-15660137)
chr7 (104-138)||(47790500-47790534)
[»] chr1 (3 HSPs)
chr1 (105-201)||(11375489-11375585)
chr1 (131-221)||(34624397-34624487)
chr1 (98-138)||(34624493-34624533)
[»] chr8 (1 HSPs)
chr8 (99-219)||(13955941-13956074)
[»] chr4 (7 HSPs)
chr4 (18-97)||(4841019-4841098)
chr4 (18-97)||(5161483-5161562)
chr4 (18-97)||(5183766-5183845)
chr4 (18-85)||(5215310-5215377)
chr4 (18-97)||(4855525-4855604)
chr4 (26-97)||(5174432-5174503)
chr4 (26-97)||(5197173-5197244)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 15660143 - 15660233
Alignment:
Q  131 ggcccaatccacacaagcacaacctctagatgcctgtagaagttgtgggaatacaaacggttataataatttttggaatttaggcagaatt 221  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  15660143 ggcccaatccacacaagcacaacctctagaagcctgtagaagctgtgggaatacaaacagttataataattattggaatttaggcagaatt 15660233  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 100 - 221
Target Start/End: Complemental strand, 18846506 - 18846372
Alignment:
Q  100 tgatagaaccctgagttcctgtacatgtgttggcc-------------caatccacacaagcacaacctctagatgcctgtagaagttgtgggaatacaa 186  Q
    |||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||| ||||||||||| || ||||||||||    
T  18846506 tgatagaaccctgagttcctgtacatgtgttggcccaattgttgggcccaatccacacaagcacaacctctagaagcctgtagaagctgcgggaatacaa 18846407  T
Q  187 acggttataataatttttggaatttaggcagaatt 221  Q
    ||||||||||||||| |||||||||||||||||||    
T  18846406 acggttataataattgttggaatttaggcagaatt 18846372  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 47790494 - 47790403
Alignment:
Q  131 ggcccaatccacacaagcacaacctctagatgcctgtagaagttgtgggaatacaaacggttataataatttttggaatttaggcagaattt 222  Q
    ||||||||||||||||| ||| | |||||| ||||||||||| |||||||| ||||||  ||| ||||||| |||||||  ||| |||||||    
T  47790494 ggcccaatccacacaagtacagcttctagaagcctgtagaagctgtgggaacacaaacatttagaataattattggaatcaaggaagaattt 47790403  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 15660099 - 15660137
Alignment:
Q  100 tgatagaaccctgagttcctgtacatgtgttggcccaat 138  Q
    |||||||||||||||||||||||||||||||||||||||    
T  15660099 tgatagaaccctgagttcctgtacatgtgttggcccaat 15660137  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 47790534 - 47790500
Alignment:
Q  104 agaaccctgagttcctgtacatgtgttggcccaat 138  Q
    |||||||||||||||||||||||||||||||||||    
T  47790534 agaaccctgagttcctgtacatgtgttggcccaat 47790500  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 11375585 - 11375489
Alignment:
Q  105 gaaccctgagttcctgtacatgtgttggcccaatccacacaagcacaacctctagatgcctgtagaagttgtgggaatacaaacggttataataatt 201  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||| ||||||||||| || |||||||||||| ||||||||||||    
T  11375585 gaaccctgagttcctatacatgtgttggcccaacccacacaagcacagcttctagaagcctgtagaagctgcgggaatacaaacagttataataatt 11375489  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 34624487 - 34624397
Alignment:
Q  131 ggcccaatccacacaagcacaacctctagatgcctgtagaagttgtgggaatacaaacggttataataatttttggaatttaggcagaatt 221  Q
    ||||||||||||||| ||||  | |||||| ||||| ||||| |||  |||||||||| |||| ||||||| ||||||| | |||||||||    
T  34624487 ggcccaatccacacaggcactgcttctagaagcctgcagaagctgtaagaatacaaacagttaaaataattattggaatcttggcagaatt 34624397  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 34624533 - 34624493
Alignment:
Q  98 tctgatagaaccctgagttcctgtacatgtgttggcccaat 138  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  34624533 tctgatagaaccctaagctcctgtacatgtgttggcccaat 34624493  T

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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 13956074 - 13955941
Alignment:
Q  99 ctgatagaaccctgagttcctgtacatgtgttggcccaat-------------ccacacaagcacaacctctagatgcctgtagaagttgtgggaataca 185  Q
    ||||||||||||||||||||||||||||||||||||||||             ||||||||||||| | |||||| ||||||||||| ||||| ||||||    
T  13956074 ctgatagaaccctgagttcctgtacatgtgttggcccaattgttgggcccaatccacacaagcacagcttctagaagcctgtagaagctgtggaaataca 13955975  T
Q  186 aacggttataataatttttggaatttaggcagaa 219  Q
    ||| |||||||||||| |||||||||||||||||    
T  13955974 aacagttataataattattggaatttaggcagaa 13955941  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4841098 - 4841019
Alignment:
Q  18 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 97  Q
    ||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||  ||||||| ||||||| || |||||    
T  4841098 tacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttagaaatcttcaatgtgtcatacaacaa 4841019  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 5161483 - 5161562
Alignment:
Q  18 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 97  Q
    ||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| |||| | ||||| || |||||    
T  5161483 tacaataacttgagtggtaagataccttatgagctaacccagttgacctttttatcaaccttcaacgtgtcatacaacaa 5161562  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 5183766 - 5183845
Alignment:
Q  18 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 97  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| || ||||  ||||||| ||||||| || |||||    
T  5183766 tacaataacttgagtggtaagattccttatgaactaaccaagttgacctctttagaaatcttcaatgtgtcatacaacaa 5183845  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 5215310 - 5215377
Alignment:
Q  18 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgt 85  Q
    ||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||| |||| ||||    
T  5215310 tacaataacttgagtggtaagataccaaatgaactaacccagttgaactttttatcaaccttcaatgt 5215377  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 4855604 - 4855525
Alignment:
Q  18 tacaatagcttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 97  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||| || ||||  ||| ||| ||||||| || |||||    
T  4855604 tacaataacttgagtggtaagataccttatgaactaaccaagttgacctctttagaaatattcaatgtgtcatacaacaa 4855525  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 5174432 - 5174503
Alignment:
Q  26 cttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 97  Q
    ||||||||||||||| ||  |||||||||||||| | |||||||| |||| |||| ||||||| || |||||    
T  5174432 cttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaa 5174503  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 5197173 - 5197244
Alignment:
Q  26 cttgagtggtaagattccttatgaactaacccagttgaactttttatcaatcttcgatgtgtcttataacaa 97  Q
    ||||||||||||||| ||  |||||||||||||| | |||||||| |||| |||| ||||||| || |||||    
T  5197173 cttgagtggtaagatacccaatgaactaacccagctaaactttttgtcaaccttcaatgtgtcatacaacaa 5197244  T

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