View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2347_low_3 (Length: 504)
Name: NF2347_low_3
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Original strand, 33441608 - 33442087
Alignment:
| Q |
15 |
catcagcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcacca----aagcaaataacataaataataat |
110 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| || |||| | |||||||||||| |
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| T |
33441608 |
catcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataat |
33441707 |
T |
|
| Q |
111 |
gaagggggctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatca |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441708 |
gaagggggctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatca |
33441807 |
T |
|
| Q |
211 |
atctctgttaaatatttggaaaagcttctttggcagcacggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441808 |
atctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtc |
33441907 |
T |
|
| Q |
311 |
accaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33441908 |
accaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagt |
33442007 |
T |
|
| Q |
411 |
gatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttatcttgtccactagttaacacaggt |
490 |
Q |
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| T |
33442008 |
gatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33442087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Original strand, 33451828 - 33452307
Alignment:
| Q |
15 |
catcagcaaataatttcaataactctcatgacttttattaatcatcaataacaagatgatattacattcacca----aagcaaataacataaataataat |
110 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| || |||| | |||||||||||| |
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| T |
33451828 |
catcagcaaataatctcaatgcctctcatgggttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataat |
33451927 |
T |
|
| Q |
111 |
gaagggggctaattattagtaataactaactggggaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatca |
210 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33451928 |
gaagggggctaattattagtaataactaactgggaaaaaaacagcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatca |
33452027 |
T |
|
| Q |
211 |
atctctgttaaatatttggaaaagcttctttggcagcacggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452028 |
atctctgttaaatatttggaaaagcttctttggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtc |
33452127 |
T |
|
| Q |
311 |
accaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452128 |
accaggtcaagtgatggtgatggagaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagt |
33452227 |
T |
|
| Q |
411 |
gatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttatcttgtccactagttaacacaggt |
490 |
Q |
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| T |
33452228 |
gatcggtaacacttgaaatgtaccatcttctcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33452307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 348 - 495
Target Start/End: Original strand, 33399629 - 33399776
Alignment:
| Q |
348 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
447 |
Q |
| |
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||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
|
| Q |
448 |
ggttgtaattataattttatcttgtccactagttaacacaggttctgc |
495 |
Q |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 335 - 486
Target Start/End: Original strand, 33395729 - 33395880
Alignment:
| Q |
335 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
434 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
|
| Q |
435 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacac |
486 |
Q |
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||||||| ||||||||||| | || |||| |||| ||||||||||||||||| |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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