View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2347_low_6 (Length: 447)

Name: NF2347_low_6
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2347_low_6
NF2347_low_6
[»] chr5 (6 HSPs)
chr5 (49-431)||(2478718-2479100)
chr5 (226-291)||(40537110-40537175)
chr5 (349-430)||(40532006-40532087)
chr5 (226-291)||(40532145-40532210)
chr5 (340-430)||(40536971-40537061)
chr5 (232-289)||(38810205-38810262)
[»] chr8 (1 HSPs)
chr8 (154-428)||(41622920-41623194)
[»] chr3 (1 HSPs)
chr3 (226-430)||(20501326-20501530)
[»] chr4 (2 HSPs)
chr4 (211-279)||(55168268-55168336)
chr4 (349-389)||(55168158-55168198)
[»] chr1 (1 HSPs)
chr1 (348-389)||(24042554-24042595)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 49 - 431
Target Start/End: Complemental strand, 2479100 - 2478718
Alignment:
Q  49 ctacactcaccaggataaaataactttaaatccaaatatgtactaaaattattatttgtcatcgcaatactaaacacacacttagttaagctaaaacgag 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2479100 ctacactcaccaggataaaataactttaaatccaaatatgtactaaaattattatttgtcatcgcaatactaaacacacacttagttaagctaaaacgag 2479001  T
Q  149 cttactaaccgggtttgaaaaacacggagagaccaaaatcggtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaa 248  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2479000 cttactaaccgggcttgaaaaacacggagagaccaaaatctgtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaa 2478901  T
Q  249 atccctatgcataacacccatagtatgacaattatgaacaacagtgacaatctggcgacacagctcagccgcagcacgttcagagtaatgacctttggat 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2478900 atccctatgcataacacccatagtatgacaattatgaacaacagtgacaatctggcgacacagctcagccgcagcacgttcagagtaatgacctttggat 2478801  T
Q  349 ataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaag 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2478800 ataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaag 2478718  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 40537175 - 40537110
Alignment:
Q  226 aacaagaaattctcaggcttcaaatccctatgcataacacccatagtatgacaattatgaacaaca 291  Q
    ||||||||||| || ||||||||||| |||||||| |||||||||  ||||||| |||||||||||    
T  40537175 aacaagaaattttctggcttcaaatctctatgcatcacacccataaaatgacaaatatgaacaaca 40537110  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 40532087 - 40532006
Alignment:
Q  349 ataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaa 430  Q
    |||||||| |||||||| ||||||||||||||||| ||||| | || || ||| ||||    ||||||||||||||||||||    
T  40532087 ataatcctgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaa 40532006  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 40532210 - 40532145
Alignment:
Q  226 aacaagaaattctcaggcttcaaatccctatgcataacacccatagtatgacaattatgaacaaca 291  Q
    ||||||||||| || || |||||||| |||||||| |||||||||  ||||||| |||||||||||    
T  40532210 aacaagaaattttctggtttcaaatctctatgcatcacacccataaaatgacaaatatgaacaaca 40532145  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 430
Target Start/End: Complemental strand, 40537061 - 40536971
Alignment:
Q  340 cctttggatataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaa 430  Q
    |||||||  |||||| ||||| |||| ||||||||||||||||| ||||| | || || ||| ||||    ||||||||||||||||||||    
T  40537061 cctttggcaataatcgtatcataaagttcaccaccagcacaaagttccataacaacatgaactgaattttcatcctcataagcacctttaa 40536971  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 38810205 - 38810262
Alignment:
Q  232 aaattctcaggcttcaaatccctatgcataacacccatagtatgacaattatgaacaa 289  Q
    |||||||||||||| | ||| ||||| ||||||||||| | ||||||| |||||||||    
T  38810205 aaattctcaggcttaagatctctatgaataacacccatggaatgacaagtatgaacaa 38810262  T

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Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 154 - 428
Target Start/End: Original strand, 41622920 - 41623194
Alignment:
Q  154 taaccgggtttgaaaaacacggagagaccaaaatcggtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaaatccc 253  Q
    ||||| || ||||||||||| |||||||||||||| || || || || |||||||| || |  |||| ||||||||||||||||||||| ||||| ||||    
T  41622920 taacctggcttgaaaaacacagagagaccaaaatccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccc 41623019  T
Q  254 tatgcataacacccatagtatgacaattatgaacaacagtgacaatctggcgacacagctcagccgcagcacgttcagagtaatgacctttggatataat 353  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||| ||||| || | ||| |||||||||||||||||||| ||||||   |||||    
T  41623020 tatgcataactcccatagtatgacaattatgaacaaccgtaacaatctgacgacaaagattagcagcagcacgttcagagtaatgtcctttgagaataat 41623119  T
Q  354 cctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcaccttt 428  Q
    || ||||||||| ||||||||||||||||||||||| | ||| ||||| || ||   ||||||||||||||||||    
T  41623120 ccgatcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt 41623194  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 430
Target Start/End: Complemental strand, 20501530 - 20501326
Alignment:
Q  226 aacaagaaattctcaggcttcaaatccctatgcataacacccatagtatgacaattatgaacaacagtgacaatctggcgacacagctcagccgcagcac 325  Q
    |||||||||||||| || |||| ||||||||||||||| ||||||  ||||||| ||| ||||||| | |||||||| | ||| |    ||| |||||      
T  20501530 aacaagaaattctctggtttcagatccctatgcataactcccataaaatgacaaatattaacaacattaacaatctgtctacaaatagaagcagcagctt 20501431  T
Q  326 gttcagagtaatgacctttggatataatcctatcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacc 425  Q
     ||||   ||||| ||||| |  || |||||||||||||| ||||||||||||||||| ||||| | || || ||| ||||  | |||||||||||| ||    
T  20501430 tttcactataatgtcctttagcaatgatcctatcaaaaagttcaccaccagcacaaagttccataacaacatgaactgaattcctatcctcataagctcc 20501331  T
Q  426 tttaa 430  Q
    |||||    
T  20501330 tttaa 20501326  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 55168336 - 55168268
Alignment:
Q  211 tcatgcttactaagaaacaagaaattctcaggcttcaaatccctatgcataacacccatagtatgacaa 279  Q
    |||| |||||||  || |||||||||||||||||||||||| | ||||| ||||||||||  |||||||    
T  55168336 tcatccttactagaaagcaagaaattctcaggcttcaaatcgcgatgcaaaacacccataaaatgacaa 55168268  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 55168198 - 55168158
Alignment:
Q  349 ataatcctatcaaaaagctcaccaccagcacaaagctccat 389  Q
    |||||||||||||| | |||||||||||||||||| |||||    
T  55168198 ataatcctatcaaacaactcaccaccagcacaaagttccat 55168158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 24042595 - 24042554
Alignment:
Q  348 tataatcctatcaaaaagctcaccaccagcacaaagctccat 389  Q
    |||||||||||| |||||||||||||||||||| | ||||||    
T  24042595 tataatcctatcgaaaagctcaccaccagcacataactccat 24042554  T

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