View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2347_low_7 (Length: 419)
Name: NF2347_low_7
Description: NF2347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2347_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 31027425 - 31027819
Alignment:
| Q |
18 |
tgatctggtctacaaacacaattagcaaagcaatggaattgcaagacaatggaaatttggttttgcttggtaccgacgacaatgatacagttatttggca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
31027425 |
tgatctggtctacaaacacaattagcaaagcaatggaattgcaagacaatggaaatttggttttgcttggtaacgacgacaatgatacggtaatttggca |
31027524 |
T |
|
| Q |
118 |
aagttttagttatccaactgatactttgatgccttcacaggatttcaaagagggaatgaaacttaccagcgaacctagtccgaataacttgacctatgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
31027525 |
aagttttagttatccaactgatactttgatgccttcgcaggaattcaaagagggaatgaaacttaccagtgaacctagtccaaataacttgacctatgtt |
31027624 |
T |
|
| Q |
218 |
cttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttattggactatgcagaaggataatcgtaaaataatcgataagg |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
31027625 |
cttgagatcaaatcaggtaatgttattctttcagctggttacaaaactccacaaacatattggactatgcagaaggataaccgtaaaataatagataagg |
31027724 |
T |
|
| Q |
318 |
tcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacagtaagtctttgttatggcaattcattttctctgct |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31027725 |
tcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacaataagtctttgttatggcaattcattttctctgct |
31027819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 33806553 - 33806161
Alignment:
| Q |
18 |
tgatctggtctacaaacacaattagcaaagcaatggaattgcaagacaatggaaatttggttttgcttggtaccgacgacaatgatacagttatttggca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| || |||||||| |
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|
| T |
33806553 |
tgatctggtctacaaacacaattagcaaaacaatggaattgcaagacactggaaatttggttttgcttggtaacgacgacaataatacggtaatttggca |
33806454 |
T |
|
| Q |
118 |
aagttttagttatccaactgatactttgatgccttcacaggatttcaaagagggaatgaaacttaccagcgaacctagtccgaataacttgacctatgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |
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|
| T |
33806453 |
aagttttagttatccaactgatactttaatgccttcacaagatttcaaagagggaatgaaacttaccagtgaacctagttcaaataacttgacctatgtt |
33806354 |
T |
|
| Q |
218 |
cttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttattggactatgcagaaggataatcgtaaaataatcgataagg |
317 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |||||||| | ||||||| |
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|
| T |
33806353 |
cttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgataaccgtaaaatcgttgataagg |
33806254 |
T |
|
| Q |
318 |
tcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacagtaagtctttgttatggcaattcattttctctg |
410 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||| |
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|
| T |
33806253 |
tcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatggaaattcattttctctg |
33806161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 33811751 - 33812143
Alignment:
| Q |
18 |
tgatctggtctacaaacacaattagcaaagcaatggaattgcaagacaatggaaatttggttttgcttggtaccgacgacaatgatacagttatttggca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||| ||||||||| |||| || |||||||| |
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|
| T |
33811751 |
tgatctggtctacaaacacaattagcaaaacaatggaattgcaaaacactggaaatttggttttgcttggtaaggacgacaataatacggtaatttggca |
33811850 |
T |
|
| Q |
118 |
aagttttagttatccaactgatactttgatgccttcacaggatttcaaagagggaatgaaacttaccagcgaacctagtccgaataacttgacctatgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
33811851 |
aagttttagttatccaactgatactttgatgcattcacaggatttcaaagagggaatgaaacttaccagtgaacctagttcaaataacttgacctatgtt |
33811950 |
T |
|
| Q |
218 |
cttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttattggactatgcagaaggataatcgtaaaataatcgataagg |
317 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| |||||||| | ||||||| |
|
|
| T |
33811951 |
cttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgataaccgtaaaatcgttgataagg |
33812050 |
T |
|
| Q |
318 |
tcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacagtaagtctttgttatggcaattcattttctctg |
410 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
33812051 |
tcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtctttgttatggaaattcattttctctg |
33812143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 33802071 - 33801679
Alignment:
| Q |
18 |
tgatctggtctacaaacacaattagcaaagcaatggaattgcaagacaatggaaatttggttttgcttggtaccgacgacaatgatacagttatttggca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| || |||||||| |
|
|
| T |
33802071 |
tgatctggtctacaaacacaattagcaaaacaatggaattgcaagacactggaaatttggttttgcttggtaacgacgacaataatacggtaatttggca |
33801972 |
T |
|
| Q |
118 |
aagttttagttatccaactgatactttgatgccttcacaggatttcaaagagggaatgaaacttaccagcgaacctagtccgaataacttgacctatgtt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
33801971 |
aagttttagttatccaactgatactttaatgccttcacaagatttcaaagagggaatgaaacttaccagtgaacctagttcaaataacttgacctatgtt |
33801872 |
T |
|
| Q |
218 |
cttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttattggactatgcagaaggataatcgtaaaataatcgataagg |
317 |
Q |
| |
|
|||||||| ||||| ||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| ||||| ||||||| || | ||| |
|
|
| T |
33801871 |
cttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgataaccgtaaaacgattaacaaga |
33801772 |
T |
|
| Q |
318 |
tcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacagtaagtctttgttatggcaattcattttctctg |
410 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
33801771 |
atggtgatgttgtggcttttgcaaatctcagtgataattcttggaggttctatgataacaataagtctttgttatggcaattcattgtctctg |
33801679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 110 - 410
Target Start/End: Original strand, 49462484 - 49462784
Alignment:
| Q |
110 |
atttggcaaagttttagttatccaactgatactttgatgccttcacaggatttcaaagagggaatgaaacttaccagcgaacctagtccgaataacttga |
209 |
Q |
| |
|
||||||||||||||| || ||| |||||||||||||||||| ||||| ||| || || |||||||| |||| || ||||||||| | ||||| |||| |
|
|
| T |
49462484 |
atttggcaaagttttgattttcctactgatactttgatgcctcaacaggtttttaaggaaggaatgaagattactagtgaacctagttcaaataatttga |
49462583 |
T |
|
| Q |
210 |
cctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactccacagatttattggactatgcagaaggataatcgtaaaataat |
309 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||| ||||||| |||| ||||||| ||||||||||||||||| ||||||| | |||| || |
|
|
| T |
49462584 |
cctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccacaggtttattggactatgcaggaggataacaggaaaaccat |
49462683 |
T |
|
| Q |
310 |
cgataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacagtaagtctttgttatggcaattcattttctct |
409 |
Q |
| |
|
||||||| || |||||||||| | || ||||| ||||||||||||||||| || |||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
49462684 |
tgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttatgatgacaagaagtctttgttgtggcaattcattttctct |
49462783 |
T |
|
| Q |
410 |
g |
410 |
Q |
| |
|
| |
|
|
| T |
49462784 |
g |
49462784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 140 - 317
Target Start/End: Complemental strand, 10071439 - 10071262
Alignment:
| Q |
140 |
actttgatgccttcacaggatttcaaagagggaatgaaacttaccagcgaacctagtccgaataacttgacctatgttcttgagattaaatcaggtaatg |
239 |
Q |
| |
|
||||||| | ||||| || | |||||||||| || ||||||||| || ||||||| ||| ||||||| ||||||||||||| |||| ||||| ||||||| |
|
|
| T |
10071439 |
actttgacgacttcaaagaaattcaaagaggtaaagaaacttacaagtgaacctattccaaataactcgacctatgttcttcagataaaatctggtaatg |
10071340 |
T |
|
| Q |
240 |
ttattctttcagctggttacaaaactccacagatttattggactatgcagaaggataatcgtaaaataatcgataagg |
317 |
Q |
| |
|
|||| |||| ||||||| ||||||||| || ||| | |||||||||||||| ||| || |||| ||| ||||||| |
|
|
| T |
10071339 |
ctattgtttctgctggtttggaaactccactgacttactagactatgcagaagggtaaccgcaaaacaattgataagg |
10071262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 268
Target Start/End: Complemental strand, 7815191 - 7815117
Alignment:
| Q |
194 |
agtccgaataacttgacctatgttcttgagattaaatcaggtaatgttattctttcagctggttacaaaactcca |
268 |
Q |
| |
|
||||| ||||||||||||| |||| ||||||| ||||| ||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
7815191 |
agtccaaataacttgacctttgttattgagatcaaatctggtaatgttatactttcagcttgtttcaaaactcca |
7815117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 2529897 - 2529858
Alignment:
| Q |
48 |
caatggaattgcaagacaatggaaatttggttttgcttgg |
87 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2529897 |
caatggaattacaagacaatggaaatttagttttgcttgg |
2529858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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