View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2348_high_1 (Length: 766)

Name: NF2348_high_1
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2348_high_1
NF2348_high_1
[»] chr2 (10 HSPs)
chr2 (19-752)||(10546918-10547651)
chr2 (673-752)||(10508971-10509050)
chr2 (667-752)||(10464766-10464851)
chr2 (677-752)||(10476044-10476119)
chr2 (674-752)||(10494363-10494441)
chr2 (673-752)||(7478921-7479000)
chr2 (424-457)||(44460357-44460390)
chr2 (427-457)||(12749993-12750023)
chr2 (316-353)||(10864728-10864765)
chr2 (424-457)||(29324184-29324217)
[»] chr7 (5 HSPs)
chr7 (480-539)||(96784-96843)
chr7 (484-536)||(5363792-5363844)
chr7 (424-464)||(38622874-38622914)
chr7 (426-464)||(40869549-40869587)
chr7 (425-454)||(1109354-1109383)
[»] chr5 (5 HSPs)
chr5 (424-466)||(4787938-4787980)
chr5 (424-462)||(41399567-41399605)
chr5 (425-469)||(10389957-10390001)
chr5 (424-470)||(875722-875767)
chr5 (424-457)||(38346888-38346921)
[»] chr6 (3 HSPs)
chr6 (424-457)||(21869889-21869922)
chr6 (426-467)||(4354335-4354376)
chr6 (424-457)||(31694724-31694757)
[»] chr4 (5 HSPs)
chr4 (425-458)||(2843582-2843615)
chr4 (427-464)||(18968304-18968341)
chr4 (428-464)||(20989522-20989558)
chr4 (424-464)||(34581605-34581645)
chr4 (482-536)||(26275458-26275512)
[»] chr8 (4 HSPs)
chr8 (426-469)||(31809797-31809840)
chr8 (431-470)||(33120549-33120588)
chr8 (488-539)||(34862995-34863046)
chr8 (424-470)||(22807094-22807140)
[»] chr3 (3 HSPs)
chr3 (425-464)||(2101653-2101692)
chr3 (425-462)||(21754265-21754302)
chr3 (486-539)||(34363313-34363366)
[»] scaffold0041 (1 HSPs)
scaffold0041 (426-464)||(96695-96733)
[»] scaffold0913 (1 HSPs)
scaffold0913 (424-457)||(1280-1313)
[»] scaffold0898 (1 HSPs)
scaffold0898 (424-457)||(4288-4321)
[»] chr1 (1 HSPs)
chr1 (424-457)||(15955919-15955952)


Alignment Details
Target: chr2 (Bit Score: 620; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 19 - 752
Target Start/End: Complemental strand, 10547651 - 10546918
Alignment:
Q  19 tcctccactttccacctccgtcacttctctgcggcatgcatcaagcattccaaggagcaacagctacgcaacatttggatttcgggactcgtcgaccctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547651 tcctccactttccacctccgtcacttctctgcggcatgcatcaagcattccaaggagcaacagctacgcaacatttggatttcgggactcgtcgaccctg 10547552  T
Q  119 ccaaatcacccgtttcagagaggtacatgttatacactggtcagatcgaaaagatggaggaggctagaaataaaattcagaggagagatgcgagacttag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  10547551 ccaaatcacccgtttcagagaggtacatgttatacactggtcagatcgaaaagatggaggaggctagaaataaaattcagagaagagatgcgagactttg 10547452  T
Q  219 gtgggatattcatgaagagcaatggctcaattttagttatcgtcggagttccacaagaaaaagttcatatcctactcagatatgtgattctttccctgca 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547451 gtgggatattcatgaagagcaatggctcaattttagttatcgtcggagttccacaagaaaaagttcatatcctactcagatatgtgattctttccctgca 10547352  T
Q  319 gatgtcactttcttcaactggaaacaccataaggtttcaattttcattttcaacgactcaattcatttttgcattttattatatgataggataccaatcc 418  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10547351 gatgttactttcttcaactggaaacaccataaggtttcaattttcattttcaacgactcaattcatttttgcattttattatatgataggataccaatcc 10547252  T
Q  419 gccattgatacactatttagtacaaaatgttgtcaaatatcggctacagtggcagcactattattgcgtagcggaattttaacaattagctattttctgc 518  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10547251 gctattgatacactatttagtacaaaatgttgtcaaatatcggctacagtggcagcactattattgcgtagcggaatttgaacaattagctattttctgc 10547152  T
Q  519 tatctgtgattgacaacattgtgtgcataaaaaagtcaaaaatattcttcttgcttgcatgcattatcgatggaatggtagtaaactgatatgatatatt 618  Q
    |||||||||||||||||||  |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  10547151 tatctgtgattgacaacat--tgtgcataaaaaagtcaaaattattcttcttgctttcatgctttatcgatggaatggtagtaaactgatatgatatatt 10547054  T
Q  619 cttgaagcattcagttaatg-nnnnnnnnnnnnnnnactttctttaaaattgtcggtcc-ttgcagatgagtgtaattgacacacctgattgtgttgact 716  Q
    ||||||||||||||||||||                |||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||    
T  10547053 cttgaagcattcagttaatgtttttttatattttttactttctttaaaattgtccgtccgttgcagatgagcgtaattgacacacctgattgtgttgact 10546954  T
Q  717 tcacttctgaggttgataatgctctgcgtgcctttg 752  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10546953 tcacttctgaggttgataatgctctacgtgcctttg 10546918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 673 - 752
Target Start/End: Complemental strand, 10509050 - 10508971
Alignment:
Q  673 gtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 752  Q
    ||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||    
T  10509050 gtccttgcagatgagcgtaattgacacacctgcttgtgttgatttcactcctgaggttgacaatgctctgcgtgcctttg 10508971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 667 - 752
Target Start/End: Complemental strand, 10464851 - 10464766
Alignment:
Q  667 ttgtcggtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 752  Q
    ||||| |||||||||||||| |||||||||||||||||||  |||||| |||||| |||||||| | ||||| |||||||||||||    
T  10464851 ttgtctgtccttgcagatgactgtaattgacacacctgatcatgttgatttcactcctgaggttcagaatgcgctgcgtgcctttg 10464766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 677 - 752
Target Start/End: Complemental strand, 10476119 - 10476044
Alignment:
Q  677 ttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 752  Q
    ||||||||||||||  ||||||||||||||  |||||| |||||| |||||||| | |||||||||||||||||||    
T  10476119 ttgcagatgagtgtgcttgacacacctgataatgttgatttcactgctgaggttcagaatgctctgcgtgcctttg 10476044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 674 - 752
Target Start/End: Complemental strand, 10494441 - 10494363
Alignment:
Q  674 tccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 752  Q
    |||||||||||||  || ||||||||||||| | ||||||| |||||| |||||||| | ||||||||| |||||||||    
T  10494441 tccttgcagatgaccgtgattgacacacctgctcgtgttgatttcactactgaggttaagaatgctctgtgtgcctttg 10494363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 673 - 752
Target Start/End: Original strand, 7478921 - 7479000
Alignment:
Q  673 gtccttgcagatgagtgtaattgacacacctgattgtgttgacttcacttctgaggttgataatgctctgcgtgcctttg 752  Q
    |||||||||||||| ||| ||||||||||||| |  |||||| |||||| |||||||| | | |||||||| ||||||||    
T  7478921 gtccttgcagatgactgtgattgacacacctgttcatgttgatttcactgctgaggttaagagtgctctgcctgcctttg 7479000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 44460357 - 44460390
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    ||||||||||||||||||||||||||||||||||    
T  44460357 tgatacactatttagtacaaaatgttgtcaaata 44460390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 427 - 457
Target Start/End: Original strand, 12749993 - 12750023
Alignment:
Q  427 tacactatttagtacaaaatgttgtcaaata 457  Q
    |||||||||||||||||||||||||||||||    
T  12749993 tacactatttagtacaaaatgttgtcaaata 12750023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 353
Target Start/End: Complemental strand, 10864765 - 10864728
Alignment:
Q  316 gcagatgtcactttcttcaactggaaacaccataaggt 353  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  10864765 gcaggtgtcactttctttaactggaaacaccataaggt 10864728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 29324184 - 29324217
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    ||||||||||||||||||||||| ||||||||||    
T  29324184 tgatacactatttagtacaaaatattgtcaaata 29324217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 480 - 539
Target Start/End: Complemental strand, 96843 - 96784
Alignment:
Q  480 tattgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaacattg 539  Q
    |||||||||||||||||||||||||  ||||||||||||||||  |||||||||| ||||    
T  96843 tattgcgtagcggaattttaacaatacgctattttctgctatccttgattgacaatattg 96784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 5363792 - 5363844
Alignment:
Q  484 gcgtagcggaattttaacaattagctattttctgctatctgtgattgacaaca 536  Q
    |||||| ||||||||||||| |||||||||||||||| |||| |||| |||||    
T  5363792 gcgtagtggaattttaacaaatagctattttctgctaactgtaattgtcaaca 5363844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 464
Target Start/End: Complemental strand, 38622914 - 38622874
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  38622914 tgatacactatttagcacaaaatgttgtcaaatagcggcta 38622874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 40869587 - 40869549
Alignment:
Q  426 atacactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  40869587 atacagtatttagtacaaaatgttgtcaaatagcggcta 40869549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 454
Target Start/End: Complemental strand, 1109383 - 1109354
Alignment:
Q  425 gatacactatttagtacaaaatgttgtcaa 454  Q
    ||||||||||||||||||||||||||||||    
T  1109383 gatacactatttagtacaaaatgttgtcaa 1109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 466
Target Start/End: Original strand, 4787938 - 4787980
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaatatcggctaca 466  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  4787938 tgatacactatttagtacaaaatgttgtcaaatagtggctaca 4787980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 462
Target Start/End: Complemental strand, 41399605 - 41399567
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaatatcggc 462  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  41399605 tgatacactatttagtacaaaatgttgtcaaatagcggc 41399567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 469
Target Start/End: Complemental strand, 10390001 - 10389957
Alignment:
Q  425 gatacactatttagtacaaaatgttgtcaaatatcggctacagtg 469  Q
    ||||||||||||| |||||||||||||||| ||||||||| ||||    
T  10390001 gatacactatttattacaaaatgttgtcaagtatcggctatagtg 10389957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 470
Target Start/End: Original strand, 875722 - 875767
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtgg 470  Q
    |||||||||||||||| ||||||||||||||||| |||||| |||||    
T  875722 tgatacactatttagt-caaaatgttgtcaaatagcggctatagtgg 875767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 38346888 - 38346921
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    |||||||||||||| |||||||||||||||||||    
T  38346888 tgatacactatttactacaaaatgttgtcaaata 38346921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 21869889 - 21869922
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    ||||||||||||||||||||||||||||||||||    
T  21869889 tgatacactatttagtacaaaatgttgtcaaata 21869922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 4354376 - 4354335
Alignment:
Q  426 atacactatttagtacaaaatgttgtcaaatatcggctacag 467  Q
    |||||||||||||||||||||||||| ||||| | |||||||    
T  4354376 atacactatttagtacaaaatgttgtaaaatagcagctacag 4354335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 31694757 - 31694724
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    |||||||||||||||||||||||||| |||||||    
T  31694757 tgatacactatttagtacaaaatgttttcaaata 31694724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 2843615 - 2843582
Alignment:
Q  425 gatacactatttagtacaaaatgttgtcaaatat 458  Q
    ||||||||||||||||||||||||||||||||||    
T  2843615 gatacactatttagtacaaaatgttgtcaaatat 2843582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 427 - 464
Target Start/End: Original strand, 18968304 - 18968341
Alignment:
Q  427 tacactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18968304 tacactatttagtacaaaatgttgtcaaatagcggcta 18968341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 428 - 464
Target Start/End: Original strand, 20989522 - 20989558
Alignment:
Q  428 acactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    |||||||||||||||||||||||||||||| ||||||    
T  20989522 acactatttagtacaaaatgttgtcaaatagcggcta 20989558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 424 - 464
Target Start/End: Original strand, 34581605 - 34581645
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  34581605 tgatacgctatttagtacaaaatgttgtcaaatagcggcta 34581645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 482 - 536
Target Start/End: Complemental strand, 26275512 - 26275458
Alignment:
Q  482 ttgcgtagcggaattttaacaattagctattttctgctatctgtgattgacaaca 536  Q
    |||| ||||||||||| ||||| | |||||||||||| |||||| ||||||||||    
T  26275512 ttgcatagcggaatttgaacaaatcgctattttctgcgatctgtaattgacaaca 26275458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 469
Target Start/End: Original strand, 31809797 - 31809840
Alignment:
Q  426 atacactatttagtacaaaatgttgtcaaatatcggctacagtg 469  Q
    |||| ||||||||||||||||||||||||||| | |||||||||    
T  31809797 atacgctatttagtacaaaatgttgtcaaataactgctacagtg 31809840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 431 - 470
Target Start/End: Complemental strand, 33120588 - 33120549
Alignment:
Q  431 ctatttagtacaaaatgttgtcaaatatcggctacagtgg 470  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  33120588 ctatttagtacaaaatgttgtcaaatagcggcttcagtgg 33120549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 34862995 - 34863046
Alignment:
Q  488 agcggaattttaacaattagctattttctgctatctgtgattgacaacattg 539  Q
    |||||||||||||||||  ||| ||||||||||||  |||||||||||||||    
T  34862995 agcggaattttaacaatctgctgttttctgctatccttgattgacaacattg 34863046  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 22807140 - 22807094
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaatatcggctacagtgg 470  Q
    |||||||||||||||||| |||||||||||||||  |||||| ||||    
T  22807140 tgatacactatttagtacgaaatgttgtcaaataatggctactgtgg 22807094  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 464
Target Start/End: Complemental strand, 2101692 - 2101653
Alignment:
Q  425 gatacactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  2101692 gatacactatttagtacaaagtgttgtcaaataacggcta 2101653  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 462
Target Start/End: Original strand, 21754265 - 21754302
Alignment:
Q  425 gatacactatttagtacaaaatgttgtcaaatatcggc 462  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  21754265 gatacactatttagtacaaattgttgtcaaatagcggc 21754302  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 486 - 539
Target Start/End: Original strand, 34363313 - 34363366
Alignment:
Q  486 gtagcggaattttaacaattagctattttctgctatctgtgattgacaacattg 539  Q
    ||||| || ||||||||||  ||||||||| ||||||||||||||||| |||||    
T  34363313 gtagcagatttttaacaatctgctattttccgctatctgtgattgacatcattg 34363366  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 426 - 464
Target Start/End: Original strand, 96695 - 96733
Alignment:
Q  426 atacactatttagtacaaaatgttgtcaaatatcggcta 464  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  96695 atacagtatttagtacaaaatgttgtcaaatagcggcta 96733  T

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Target: scaffold0913 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 457
Target Start/End: Complemental strand, 1313 - 1280
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    ||||||||||||||||||||| ||||||||||||    
T  1313 tgatacactatttagtacaaagtgttgtcaaata 1280  T

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Target: scaffold0898 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 4288 - 4321
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    ||||||||||||||||||||| ||||||||||||    
T  4288 tgatacactatttagtacaaagtgttgtcaaata 4321  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 457
Target Start/End: Original strand, 15955919 - 15955952
Alignment:
Q  424 tgatacactatttagtacaaaatgttgtcaaata 457  Q
    ||||||||||||||| ||||||||||||||||||    
T  15955919 tgatacactatttaggacaaaatgttgtcaaata 15955952  T

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