View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_11 (Length: 334)
Name: NF2348_high_11
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 318
Target Start/End: Complemental strand, 4575649 - 4575427
Alignment:
| Q |
97 |
aaaatatgatcacaattgttggtcttatgtgttggacattaaacacacctttaatttaaaatgtcggtgctacaaaggtttgtaacgtacaattgatttc |
196 |
Q |
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| T |
4575649 |
aaaatatgatcacaattgttggtcctatgtgttggacattaaacacacctttaatttaaaatgtcggtgctacaaaggtttgtaacgtacaattgatttc |
4575550 |
T |
|
| Q |
197 |
ttacgcattgaccgtgtatatgatttgaatccacgaattaatgca-nnnnnnnnnnnnnnnnnnnnnccagtattcaagaggcctttttcattattcaag |
295 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4575549 |
ttacgcattgaccgtgtatatgatttgaatccatgaattaatgcatttttttatcacatttttttttccagtattcaagaggcctttttcattattcaag |
4575450 |
T |
|
| Q |
296 |
aggtctttttctcatgaatttct |
318 |
Q |
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||||||||||||||||||||||| |
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| T |
4575449 |
aggtctttttctcatgaatttct |
4575427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 4575766 - 4575664
Alignment:
| Q |
11 |
cagagagatacacaacactcatccatcaatatcgataataatttaagaaaatgagttgataaagtataatcacannnnnnnacaataaaatatgatcaca |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
4575766 |
cagagacatacacaacactcatccatcaatatcgataataatttaagaaaatgagttgataaagtataatcacatttttttacaataaaatatgatcaca |
4575667 |
T |
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| Q |
111 |
att |
113 |
Q |
| |
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||| |
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| T |
4575666 |
att |
4575664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 54083910 - 54083857
Alignment:
| Q |
122 |
tatgtgttggacattaaacacacctttaatttaaaatgtcggtgctacaaaggt |
175 |
Q |
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| T |
54083910 |
tatgtgttgaacattaatcacgtctttaattaaaagtgtcggtgctacaaaggt |
54083857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 29711248 - 29711288
Alignment:
| Q |
24 |
aacactcatccatcaatatcgataataatttaagaaaatga |
64 |
Q |
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| T |
29711248 |
aacactcatgcatcaacatcgataataatttgagaaaatga |
29711288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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