View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_12 (Length: 328)
Name: NF2348_high_12
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 172 - 313
Target Start/End: Original strand, 3854900 - 3855034
Alignment:
| Q |
172 |
gttgttgttaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataa |
271 |
Q |
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| T |
3854900 |
gttgttgctaatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaac----- |
3854994 |
T |
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| Q |
272 |
tgataataatattcctcatcctcttttctcaaagctaagctc |
313 |
Q |
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| T |
3854995 |
-gacaataatattcctcatcctc-tttctcaaagctaagctc |
3855034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 3854755 - 3854833
Alignment:
| Q |
15 |
caaaggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcc |
93 |
Q |
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| T |
3854755 |
caaagacattgcagttggggacaaattgtggatgcaatgaattatgatcatcaacgcttgatccatagcctcctcctcc |
3854833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 272
Target Start/End: Complemental strand, 4141730 - 4141638
Alignment:
| Q |
180 |
taatatgataaagttaacaaaccttatgaattacaatactttgaagagaggggcaggcgcggatgaacttcttcaaccaatcccaacgataat |
272 |
Q |
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| T |
4141730 |
taatatgatagagttaacaaaccttatgaatcacaatactttgaagagaggggcaggcgcggatgaatttcttcaaccaatcccaatgataat |
4141638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 4141902 - 4141819
Alignment:
| Q |
15 |
caaaggcattgcagttgggaacaaattgtggatgcaatgaattatgatcatcaacgcttaatccatagcctcctcctcctccga |
98 |
Q |
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| T |
4141902 |
caaaggcattgcagttggggacaaattgtggatgcaatgaattatgatcatcgccgcttaatccataacctactcctcctccga |
4141819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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