View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_14 (Length: 281)
Name: NF2348_high_14
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 34932643 - 34932881
Alignment:
| Q |
27 |
attcttctcactttctatttcatcaagccattgctgaagcgataccagttcgggatcctgtgggtttaaagagtaagtaatattaaagaactagaatacg |
126 |
Q |
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| T |
34932643 |
attcttctcacattctattttatcaagcattttctgaagcgatgccagttcgagatcctgtgggtttaaagagtaagtaatattaaagaactagaatacg |
34932742 |
T |
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| Q |
127 |
cacaaagaaactaaaatagtgaaactagaattaaaagaaagcatttgctacaggccccagaaaagcttgcctcggctttaaacacaggaatgttgtcgaa |
226 |
Q |
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| T |
34932743 |
cacaaagaatctaaaattgtgaaactagaatcaaaagaaagcatttgctacaggccccagaaaagcttgcctcggctttaaacacaggaaggttgtcgaa |
34932842 |
T |
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| Q |
227 |
catgtgcgcaggagttattccgtgtgcgtatctcgatgg |
265 |
Q |
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| T |
34932843 |
catgtgcgcaggagttattccgtgtgtgtatctcgatgg |
34932881 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 38648614 - 38648688
Alignment:
| Q |
89 |
ggtttaaagagtaagtaatattaaagaactagaatacgcacaaagaaactaaaatagtgaaactagaattaaaag |
163 |
Q |
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| T |
38648614 |
ggtttatagattaattaatattaaagaattcaaatatgaacaaagaaactaaaattgtgaaacttgaatcaaaag |
38648688 |
T |
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