View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_17 (Length: 252)
Name: NF2348_high_17
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 11685983 - 11685745
Alignment:
| Q |
1 |
atgtataagaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactc |
100 |
Q |
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| T |
11685983 |
atgtatacgaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactc |
11685884 |
T |
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| Q |
101 |
ttcggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggag |
200 |
Q |
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| T |
11685883 |
ttcggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggag |
11685784 |
T |
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| Q |
201 |
agaggcttacctttttctcgcaatctggatgttgtccct |
239 |
Q |
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| T |
11685783 |
agagggttacctttttctcgcaatctggatgttgtccct |
11685745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 11689995 - 11689757
Alignment:
| Q |
1 |
atgtataagaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactc |
100 |
Q |
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| T |
11689995 |
atgtatacgaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactc |
11689896 |
T |
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| Q |
101 |
ttcggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggag |
200 |
Q |
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| T |
11689895 |
ttcggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggag |
11689796 |
T |
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| Q |
201 |
agaggcttacctttttctcgcaatctggatgttgtccct |
239 |
Q |
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| T |
11689795 |
agagggttacctttttctcgcaatctggatgttgtccct |
11689757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 11636572 - 11636800
Alignment:
| Q |
10 |
aagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactcttcggcatt |
109 |
Q |
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| T |
11636572 |
aagatcctttgaagaactattacagagattcccctgatgaccaatggatccgtgcgatagatttcactccttgcaactgtattgggcagtcttccgctat |
11636671 |
T |
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| Q |
110 |
atgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggagagaggctta |
209 |
Q |
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| T |
11636672 |
atgtctagagctttctagtaacagagattttccgaatttcaaggaaaactgtgttcattatgaggaaatcgagggtcaatacacattggagagcggatca |
11636771 |
T |
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| Q |
210 |
cctttttctcgcaatctggatgttgtccc |
238 |
Q |
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| T |
11636772 |
tctttttcttgcaatccggatgttgtccc |
11636800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 11627805 - 11628040
Alignment:
| Q |
3 |
gtataagaagatcctgcgaagaattattataaagattcccctgatgagcaatggacccgttccatagatttcacacctttcagttgtattgggcactctt |
102 |
Q |
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||||| ||||||| | | ||||| |||| || ||| |||||||||| ||||||| |||| | |||||||||| || | ||||||||||||||| |||| |
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| T |
11627805 |
gtatacgaagatctttccaagaactattttagcgatccccctgatgaccaatggatccgtgcagtagatttcactccatgcagttgtattgggcagtctt |
11627904 |
T |
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| Q |
103 |
cggcattatgtatagagcttcctagtaacagagattttccgaatttcagggaaaactttgctcattatgaggaaattgaggggaattacactttggagag |
202 |
Q |
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| T |
11627905 |
ctgctttatgtctagagcttcctagcaacagagattttccgaatttcagggaaaactttgctcagtacgaggaaagtgcgggtccatacatgttggagag |
11628004 |
T |
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| Q |
203 |
aggcttacctttttctcgcaatctggatgttgtccc |
238 |
Q |
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| T |
11628005 |
cggatcacctttttcttgcaatctggatgttgtccc |
11628040 |
T |
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