View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_18 (Length: 246)
Name: NF2348_high_18
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 11686228 - 11686455
Alignment:
| Q |
5 |
atccagcacatgcacaaaaatttcctgcaatgctatggaagaaatggtatccattgaaatcttacttaatatgaaatgaaa-ttgtgaaaacatctacca |
103 |
Q |
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| T |
11686228 |
atccagtatatgcacaaaaatttcctgcaatgctatggaagaaatggtatccattgaaatcttacttaatatgaaatgaaaattgtgaaaacatctacca |
11686327 |
T |
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| Q |
104 |
cagttcatgaagcataaacgagatatatcacgtattaatgaaacgaaaaagctttgcatgtcagggattttattcatcatataaaagttacatttaacaa |
203 |
Q |
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|||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11686328 |
cagttcatgaagcataaatgagatatagcacgcattaatgaaacgaaaaagctttgcatgtcagggattttattcatcatataaaagttacatttaacaa |
11686427 |
T |
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| Q |
204 |
cctgaatcaatagatacttggcagtttt |
231 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11686428 |
cctgaatcaatagatacttggcagtttt |
11686455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 11690240 - 11690467
Alignment:
| Q |
5 |
atccagcacatgcacaaaaatttcctgcaatgctatggaagaaatggtatccattgaaatcttacttaatatgaaatgaaa-ttgtgaaaacatctacca |
103 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11690240 |
atccagtatatgcacaaaaatttcctgcaatgctatggaagaaatggtatccattgaaatcttacttaatatgaaatgaaaattgtgaaaacatctacca |
11690339 |
T |
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| Q |
104 |
cagttcatgaagcataaacgagatatatcacgtattaatgaaacgaaaaagctttgcatgtcagggattttattcatcatataaaagttacatttaacaa |
203 |
Q |
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|||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11690340 |
cagttcatgaagcataaatgagatatagcacgcattaatgaaacgaaaaagctttgcatgtcagggattttattcatcatataaaagttacatttaacaa |
11690439 |
T |
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| Q |
204 |
cctgaatcaatagatacttggcagtttt |
231 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
11690440 |
cctgaatcaatagatacttggcagtttt |
11690467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 11635382 - 11635346
Alignment:
| Q |
195 |
atttaacaacctgaatcaatagatacttggcagtttt |
231 |
Q |
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|||||||||||||||||||||||||||| |||||||| |
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| T |
11635382 |
atttaacaacctgaatcaatagatactttgcagtttt |
11635346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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