View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_2 (Length: 562)
Name: NF2348_high_2
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 21 - 553
Target Start/End: Complemental strand, 31185495 - 31184963
Alignment:
| Q |
21 |
atcacttctcaaagctgtggcaaaccaaccaatatcagtttccattgatgctagtgactcaagtttcatgttttactcaagtggaatttatacaggagaa |
120 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185495 |
atcacttctcaaagctgtggcgaaccaaccaatatcagtttccattgatgctagtgactcaagtttcatgttttactcaagtggaatttatacaggagaa |
31185396 |
T |
|
| Q |
121 |
tgtggaactgagctagatcatggtgtcactgctgttggatatggtagtgctaatggtactgattattggattgtgaagaattcatggggcactgtgtggg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185395 |
tgtggaactgagctagatcatggtgtcactgctgttggatatggtagtgctaatggtactgattattggattgtgaagaattcatggggcactgtgtggg |
31185296 |
T |
|
| Q |
221 |
gtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttgtgtggtattgccatggattcttcttatccaactgcttaaattatcca |
320 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185295 |
gtgaaaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttatgtggtattgccatggattcttcttatccaactgcttaaattatcca |
31185196 |
T |
|
| Q |
321 |
gttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaacatatggctacatgaatgtaaacttatattttagaaacattaaatatacac |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31185195 |
gttatgtaacttgtgtctcaagcttgtatttttctttatcttgtttgaacatatggctacatgaatttaaacttatattttagaaacattaaatatacac |
31185096 |
T |
|
| Q |
421 |
ttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgtatatgttcatctctatttctctgactttttaccttctacaacttacacata |
520 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
31185095 |
ttatacaaaattaatacaactatgttatttgaacatcaaaatacgttgtatatgttcatctttatttctctgaatttttaccttctacaacttacacata |
31184996 |
T |
|
| Q |
521 |
ttaagacatgattgaaatttgaaacagtatatt |
553 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31184995 |
ttaagacatgattgaaatttgaaacagtatatt |
31184963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 31194326 - 31193991
Alignment:
| Q |
17 |
agatatcacttctcaaagctgtggcaaaccaaccaatatcagtttccattgatgctagtgactcaagtttcatgttttactcaagtggaatttatacagg |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31194326 |
agatatcacttctcaaagctgtggcgaaccaaccaatatcagtttctattgatgcaagtgactcaagtttcatgttttactcaagtggaatttatacagg |
31194227 |
T |
|
| Q |
117 |
agaatgtggaactgagctagatcatggtgtcactgctgttggatatggtagtgctaatggtactgattattggattgtgaagaattcatggggcactgtg |
216 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31194226 |
agaatgtggaactgagctagaccatggtgttactgctgttggttatggtagtgctaatgggactgattattggattgtgaagaattcatggggcactgtg |
31194127 |
T |
|
| Q |
217 |
tggggtgagaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttgtgtggtattgccatggattcttcttatccaactgcttaaatta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| | |
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| T |
31194126 |
tggggtgagaaagggtacataaggatgcaaagaggtatagctgataaggaaggcttatgtggtattgcaatggattcttcttatccaactgcttaacctg |
31194027 |
T |
|
| Q |
317 |
tccagttatgtaacttgtgtctcaagcttgtatttt |
352 |
Q |
| |
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| | ||||||||||||||||||||||||||||||| |
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| T |
31194026 |
ttgaattatgtaacttgtgtctcaagcttgtatttt |
31193991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 236
Target Start/End: Complemental strand, 31176610 - 31176461
Alignment:
| Q |
90 |
gttttactcaagtggaatttatacaggagaatgtggaactgagctagatcatggtgtcactgctgttggatatggtagtgc---taatggtactgattat |
186 |
Q |
| |
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|||||||||| ||||||||| ||||||| ||||||||||||| |||||||| ||| ||| |||||| |||||| | | || |||||| ||| |
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| T |
31176610 |
gttttactcaggtggaatttttacaggaaaatgtggaactgatacagatcatgttgttactattgttggttatggtgtatcacttgattatactgagtat |
31176511 |
T |
|
| Q |
187 |
tggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacat |
236 |
Q |
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||| | || || ||||||||||| |||| ||||||||||||||||||||| |
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| T |
31176510 |
tggttagtaaaaaattcatggggtactgggtggggtgagaaagggtacat |
31176461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 29733349 - 29733305
Alignment:
| Q |
85 |
ttcatgttttactcaagtggaatttatacaggagaatgtggaact |
129 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
29733349 |
ttcaagttttactcaagtgggatttttacaggagaatgtggaact |
29733305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 29746886 - 29746924
Alignment:
| Q |
91 |
ttttactcaagtggaatttatacaggagaatgtggaact |
129 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |
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| T |
29746886 |
ttttactcaagtggaatatttacaggagaatgtggaact |
29746924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 30056407 - 30056369
Alignment:
| Q |
91 |
ttttactcaagtggaatttatacaggagaatgtggaact |
129 |
Q |
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||||||||||||||||| | ||||||||||||||||||| |
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| T |
30056407 |
ttttactcaagtggaatatttacaggagaatgtggaact |
30056369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 30072927 - 30072889
Alignment:
| Q |
91 |
ttttactcaagtggaatttatacaggagaatgtggaact |
129 |
Q |
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|
||||||||||||||||| | ||||||||||||||||||| |
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| T |
30072927 |
ttttactcaagtggaatatttacaggagaatgtggaact |
30072889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 29730013 - 29729969
Alignment:
| Q |
85 |
ttcatgttttactcaagtggaatttatacaggagaatgtggaact |
129 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||||||| ||||| |
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| T |
29730013 |
ttcaagttttactcaagtgggatttttacaggagaatgtagaact |
29729969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 31727566 - 31727636
Alignment:
| Q |
178 |
actgattattggattgtgaagaattcatggggcactgtgtggggtgagaaagggtacataaggatgcaaag |
248 |
Q |
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||||| |||||| | ||||||||||||||||| ||| |||||||| |||||||||| ||||||||||| |
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| T |
31727566 |
actgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattaggatgcaaag |
31727636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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