View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_4 (Length: 501)
Name: NF2348_high_4
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 12 - 488
Target Start/End: Original strand, 48186574 - 48187053
Alignment:
| Q |
12 |
agcaaaggaaataaaagtaaaatcattgagtacttctaattatctccctgaggaccttgtagacataactgagatggattattcaccagctaggaaaaag |
111 |
Q |
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| T |
48186574 |
agcaaaggaaataaaagtaaaatcattgagtacttctaattatctccctgaggaccttgtagacataactgagatggattattcaccagctaggaaaaag |
48186673 |
T |
|
| Q |
112 |
tctcccatacacaattaattgggtctaggtagnnnnnnnn-----cagacaaaagttccttatatttggataaatataatattattatagacagaaaagt |
206 |
Q |
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| T |
48186674 |
tctcccatacacaattaattgggtctaggtagaaggaaaaaaaaacagacaaaagttccttatatttggataaatataatattattatagacagaaaagt |
48186773 |
T |
|
| Q |
207 |
cgagcattgcagaaatgctgcaattttttaaggcttagggatgatttgtacattatatatgttgttctgtcacttttattgattacaagctattttaaga |
306 |
Q |
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| T |
48186774 |
cgagcattgcagaaatgctgcaattttttaaggcttagggatgatttgtacattatatatgttgttctgtcacttttattgattacaagctattttaaga |
48186873 |
T |
|
| Q |
307 |
atatatctttttaatgcttaatcttaatatcttggcttggctcttaatttttagaagaataagataaaaagaacacaggaaagtgacaatcagtactgtt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48186874 |
atatatctttttaatgcttaatcttaatatcttggcttggctcttaatttttagaagaataagataaaaagaacacaggaaagtgacaatcagtattgtt |
48186973 |
T |
|
| Q |
407 |
tatgttcttttcaagttatgaaagcaaaaacacaaaccaggaccaatgattgcaaattgcagttttgcaaaagtaccatttg |
488 |
Q |
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| T |
48186974 |
tatgttcttttcaagttatgaaagcaaaa--acaaagcaggaccaatgattgcaaattgcagttttgcaaaagtaccatttg |
48187053 |
T |
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