View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_high_7 (Length: 418)
Name: NF2348_high_7
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 112 - 407
Target Start/End: Complemental strand, 52470543 - 52470248
Alignment:
| Q |
112 |
tgattattaagcttgaagttatactaggatatgagcgattatgaagcacactagagtataaatacacaataaacagtataaattatattaccttgcgcta |
211 |
Q |
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| T |
52470543 |
tgatttttaaggttgatgttataccaggatatgagcgattacgaagcacactagagtataaatacacaataaacagtataaattatattaccttgcgcta |
52470444 |
T |
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| Q |
212 |
gaagaatggttttgacagcgatgttgacgaccagtg-aaaaccaaaggagaaaaccgagtgaataagatgaagaatgacaaaccccgacggctttctagg |
310 |
Q |
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| T |
52470443 |
gaagaatgattttgacagcgatgttgacgaccagtgaaaaaccaaaggagaaaaccgagtgaataagatgaagaatgacaaacccc-acggctttctagg |
52470345 |
T |
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| Q |
311 |
gctaaatatatatatagagaggatcaaatcacaccttgatctcaaaattactctatttcttacttttctctctcttcccatactctttcttacctat |
407 |
Q |
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| T |
52470344 |
gctaaatatatatatagagaggatcaaatgacaccttgatctcaatattactctatttcttacctttctctctcttcccatactctctcttacctat |
52470248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 110 - 326
Target Start/End: Complemental strand, 52471372 - 52471156
Alignment:
| Q |
110 |
catgattattaagcttgaagttatactaggatatgagcgattatgaagcacactagagtataaatacacaataaacagtataaattatattaccttgcgc |
209 |
Q |
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| T |
52471372 |
catgattattaagcttgaagttatattaggatatgagcgattatgaagcagagtagagtttaaatacacaataaacagtataaattatattaccttgcgt |
52471273 |
T |
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| Q |
210 |
tagaagaatggttttgacagcgatgttgacgaccagtgaaaaccaaaggagaaaaccgagtga----ataagatgaagaatga-caaaccccgacggctt |
304 |
Q |
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| T |
52471272 |
tgaaagaatggttttgacaacgatttt---gactagttaaaaccagaggagaaaa-cgaatgaacgtataagatgaa-aataatgaaaccctgacggctt |
52471178 |
T |
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| Q |
305 |
tctagggctaaatatatatata |
326 |
Q |
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| T |
52471177 |
tctagggcaatatatatatata |
52471156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 15221459 - 15221500
Alignment:
| Q |
359 |
tactctatttcttacttttctctctcttcccatactctttct |
400 |
Q |
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| T |
15221459 |
tactctatttctcacttatctctctcttctcatactctttct |
15221500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 31880760 - 31880712
Alignment:
| Q |
359 |
tactctatttcttacttttctctctcttcccatactctttcttacctat |
407 |
Q |
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|||||||||||| |||||| |||||||| |||||||| |||||||||| |
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| T |
31880760 |
tactctatttctcacttttttctctcttttcatactctctcttacctat |
31880712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Original strand, 41322025 - 41322066
Alignment:
| Q |
366 |
tttcttacttttctctctcttcccatactctttcttacctat |
407 |
Q |
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| T |
41322025 |
tttctcacttttctctctcttctcatactctctcttacctat |
41322066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 725132 - 725180
Alignment:
| Q |
359 |
tactctatttcttacttttctctctcttcccatactctttcttacctat |
407 |
Q |
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||||||||||||||| ||| ||||||||| || ||||| |||||||||| |
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| T |
725132 |
tactctatttcttacctttttctctcttctcaaactctctcttacctat |
725180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 3207295 - 3207247
Alignment:
| Q |
359 |
tactctatttcttacttttctctctcttcccatactctttcttacctat |
407 |
Q |
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|||||||||||| || ||||||||||||| |||||||| ||| |||||| |
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| T |
3207295 |
tactctatttctaacatttctctctcttctcatactctctctcacctat |
3207247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 33989757 - 33989805
Alignment:
| Q |
359 |
tactctatttcttacttttctctctcttcccatactctttcttacctat |
407 |
Q |
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||||||||||||||| ||| ||||||||| || ||||| |||||||||| |
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| T |
33989757 |
tactctatttcttacctttttctctcttctcaaactctctcttacctat |
33989805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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