View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_low_11 (Length: 349)
Name: NF2348_low_11
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 77 - 316
Target Start/End: Original strand, 33216902 - 33217150
Alignment:
| Q |
77 |
aaacttttaggctttgtttggatatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaataaatatgct |
176 |
Q |
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| T |
33216902 |
aaacttttaggctttgtttggatatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaataaatatgct |
33217001 |
T |
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| Q |
177 |
tttatat---------gttattttcacaagctattctggaaagcatatgtaaataagctccataggcggttatcaataagatgaaaatatcatatgaatc |
267 |
Q |
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| T |
33217002 |
tttatataagttacacgttatgttcacaagctattctggaaagcatatgtaaataagctccataagcggttatcaataagatgaaaatatcacatgaatc |
33217101 |
T |
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| Q |
268 |
ttttataagttgnnnnnnnnataaattcttccaaacagtcttacaaatg |
316 |
Q |
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| T |
33217102 |
tgttataagttgttttttttataaattcttccaaacagtcttacaaatg |
33217150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 31668845 - 31668790
Alignment:
| Q |
99 |
tatagtataagcaattatcatataagtccttatgtagaagttatttcaataccaaa |
154 |
Q |
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| T |
31668845 |
tatagcataagcaattatcatataagtgcttatgtataagctatttctataacaaa |
31668790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 3217350 - 3217305
Alignment:
| Q |
99 |
tatagtataagcaattatcatataagtccttatgtagaagttattt |
144 |
Q |
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| T |
3217350 |
tatagtataagcgattatcatataagtgcttatgtataagctattt |
3217305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 32171560 - 32171600
Alignment:
| Q |
298 |
ccaaacagtcttacaaatgcttatgtctgtaaataagttca |
338 |
Q |
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| T |
32171560 |
ccaaccagtctcacaaatgcttatgtcagtaaataagttca |
32171600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 12972766 - 12972816
Alignment:
| Q |
99 |
tatagtataagcaattatcatataagtccttatgtagaagttatttcaata |
149 |
Q |
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| T |
12972766 |
tatagcataagcatttatcatataagtgcttatgtataagctatttcaata |
12972816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 2400072 - 2400126
Alignment:
| Q |
105 |
ataagcaattatcatataagtccttatgtagaagttatttcaataccaaagataa |
159 |
Q |
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| T |
2400072 |
ataaacaattatcatataagtgcttatgtataagttgtttctataacaaagataa |
2400126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 34927046 - 34927092
Alignment:
| Q |
288 |
ataaattcttccaaacagtcttacaaatgcttatgtctgtaaataag |
334 |
Q |
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| T |
34927046 |
ataagttcttccaaacagtcttataagtgcttatgtcagtaaataag |
34927092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 167
Target Start/End: Original strand, 35809857 - 35809911
Alignment:
| Q |
113 |
ttatcatataagtccttatgtagaagttatttcaataccaaagataaaagaaaat |
167 |
Q |
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| T |
35809857 |
ttatcatataagtgcttatgtataagttatttccatgacaaagataaaataaaat |
35809911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 5924108 - 5924146
Alignment:
| Q |
300 |
aaacagtcttacaaatgcttatgtctgtaaataagttca |
338 |
Q |
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| T |
5924108 |
aaacagtcttacaaatgcgtatgtcagtaaataagttca |
5924146 |
T |
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