View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_low_14 (Length: 324)
Name: NF2348_low_14
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 43409760 - 43410057
Alignment:
| Q |
1 |
ttgtaagtgtagaagctggtgaagaatctcctggtgcctgtggtcgccggtcgtcttcttcttcgagtgggagaaagtccggggacaagcgaagaaccaa |
100 |
Q |
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| T |
43409760 |
ttgtaagtgtagaagctggtgaagaatctcctggtgcctgtggtcgccggtcgtcttcttcttcgagtgggagaaagtccggggacaagcgaagaaccaa |
43409859 |
T |
|
| Q |
101 |
ggcggagaagactataagcttgccggttctgagacaatactttgccggaagcctaaaggacgctgcaaagagcatcggtggtaagtgacttgtaaaattc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43409860 |
ggcggagaagactataagcttgccggttctgagacaatactttgccggaagcctaaaggacgccgcaaagagcatcggtggtaagtgacttgtaaaattc |
43409959 |
T |
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| Q |
201 |
aatttcagtt----ttaattaattaattaaataaaactatgtcatggatattattatccaacaactcgatctcaatcacaatctgaaagtaattaaata |
295 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43409960 |
aatttcagttttaattaattaattaattaaataaaactatgtcatggatattattatccaacaactcgatctcaatcacaatctg-aagtaattaaata |
43410057 |
T |
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