View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_low_23 (Length: 237)
Name: NF2348_low_23
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8647254 - 8647032
Alignment:
| Q |
1 |
tgaatttcataagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatcttccattcttattt |
100 |
Q |
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| T |
8647254 |
tgaatttcatgagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatcttccattcttattt |
8647155 |
T |
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| Q |
101 |
gtgttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactgaccatttgattaattgtgaaggcacatata |
200 |
Q |
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| T |
8647154 |
gtgttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaactgaccatttgattaattgtgaaggcacatata |
8647055 |
T |
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| Q |
201 |
tatacatatatgttattgttaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
8647054 |
tatacatatatgttattgttaat |
8647032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30607312 - 30607412
Alignment:
| Q |
1 |
tgaatttcataagatgaattggaaactattcttaatggtacttaattttttataagtatgccattctatgactagttatctttatcttccattcttattt |
100 |
Q |
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|||||||||| |||||||||||||| |||| |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30607312 |
tgaatttcatgagatgaattggaaaatattattaatggtacttaattattgataagtatgtcattctatgactagttatctttatcttccattcttattt |
30607411 |
T |
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| Q |
101 |
g |
101 |
Q |
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| T |
30607412 |
g |
30607412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 37142407 - 37142335
Alignment:
| Q |
150 |
ttagggaataggtgttaactgaccatttgattaattgtgaaggcacatatatatacatatatgttattgttaat |
223 |
Q |
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| T |
37142407 |
ttagggagtaggtgttaattgacggttt-atcaattgtgatggcacatatatatacatctatgtcattgttaat |
37142335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Original strand, 29862919 - 29862985
Alignment:
| Q |
101 |
gtgttgttacttactagtattagtgtgttgttatcgaaatgattggatgttagggaataggtgttaa |
167 |
Q |
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|||||||||||| |||||| ||||||| |||||| || |||||||| ||||||| |||||||||||| |
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| T |
29862919 |
gtgttgttacttgctagtaatagtgtgatgttattgagatgattggttgttaggcaataggtgttaa |
29862985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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