View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_low_3 (Length: 534)
Name: NF2348_low_3
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_3 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 38725812 - 38726316
Alignment:
| Q |
18 |
acctctagcaaactcaataccatctagggcttcttgtacccatggtccaatgttagcggtactaatttcatcgctacggctaataccggcattaaacacc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725812 |
acctctagcaaactcaataccatctagggcttcttgcacccatggtccaatgttagcggtactaatttcatcgctacggctaataccggcattaaacacc |
38725911 |
T |
|
| Q |
118 |
catataggtaatgcaccaagatcctctgctagttggagaccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38725912 |
catataggtaatgcaccaagatcctctgctagttggagaccttcaaaataacctaatccatcgtcactccaataactgtaaacgtcgttccagtggccgg |
38726011 |
T |
|
| Q |
218 |
atctctcttcccttggcccaactgtttctttccacctaaaagcatattttagactgtttccttcaacataagtaccacccaagaaccttaaaaaatttgg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38726012 |
atctctcttcccttggcccaactgtttctttccacctaaaagcatattttagactgtttccttcaacctaagtaccacccaagaaccttaaaaaatttgg |
38726111 |
T |
|
| Q |
318 |
tttcaaatctgccaccattttaaaaagatcacttcgaaaaccatgacctttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38726112 |
tttcaaatctgccaccattttaaaaagatcacttcgaaaaccatgaccgttatatgtatccgaaggcatagctgacacttgatctaaccttatcacccct |
38726211 |
T |
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| Q |
418 |
ttagtttttgttgttatttgtaaactagaattatgatttgtacctttagctttaataattctctccatcttactccattttgtaacattaagtccatcag |
517 |
Q |
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| T |
38726212 |
ttagtttttgttgttatttgtaaactagaattatgatttgtacctttagctttaataattctctccatcttactccattttgtaacattaagtccatcag |
38726311 |
T |
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| Q |
518 |
cccta |
522 |
Q |
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||||| |
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| T |
38726312 |
cccta |
38726316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 513
Target Start/End: Complemental strand, 29596 - 29450
Alignment:
| Q |
367 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
466 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
29596 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
29497 |
T |
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| Q |
467 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
513 |
Q |
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| T |
29496 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
29450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 30893 - 30860
Alignment:
| Q |
17 |
aacctctagcaaactcaataccatctagggcttc |
50 |
Q |
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| T |
30893 |
aacctctagcaaactcaataccatctagggcttc |
30860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 513
Target Start/End: Original strand, 34153293 - 34153439
Alignment:
| Q |
367 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
466 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34153293 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34153392 |
T |
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| Q |
467 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
513 |
Q |
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||| || |||| |||||||| ||||||| ||||||||||||| |||| |
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| T |
34153393 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34153439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 513
Target Start/End: Complemental strand, 34169274 - 34169128
Alignment:
| Q |
367 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
466 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34169274 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34169175 |
T |
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| Q |
467 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
513 |
Q |
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||| || |||| |||||||| ||||||| ||||||||||||| |||| |
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| T |
34169174 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34169128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 367 - 513
Target Start/End: Complemental strand, 34209484 - 34209338
Alignment:
| Q |
367 |
ttatatgtatccgaaggcatagctgacacttgatctaaccatatcacccctttagtttttgttgttatttgtaaactagaattatgatttgtacctttag |
466 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||| |||||| || | ||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
34209484 |
ttatatgtatccaagggcatagctgacacttgatctaaccatactacccctctattgcttgttgttatttgtagacttgaattatgatttgtaccattag |
34209385 |
T |
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| Q |
467 |
ctttaataattctctccatcttactccattttgtaacattaagtcca |
513 |
Q |
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||| || |||| |||||||| ||||||| ||||||||||||| |||| |
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| T |
34209384 |
cttcaagaattgtctccatcctactccactttgtaacattaactcca |
34209338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 34164072 - 34164039
Alignment:
| Q |
17 |
aacctctagcaaactcaataccatctagggcttc |
50 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34164072 |
aacctctagcaaactcaataccatctagggcttc |
34164039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 34170569 - 34170536
Alignment:
| Q |
17 |
aacctctagcaaactcaataccatctagggcttc |
50 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
34170569 |
aacctctagcaaactcaataccatctagggcttc |
34170536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 34214168 - 34214135
Alignment:
| Q |
17 |
aacctctagcaaactcaataccatctagggcttc |
50 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34214168 |
aacctctagcaaactcaataccatctagggcttc |
34214135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 34430725 - 34430672
Alignment:
| Q |
309 |
aaaatttggtttcaaatctgccaccattttaaaaagatcacttcgaaaaccatg |
362 |
Q |
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|||| |||||||||||||| ||| ||||| || |||||||||||| |||||||| |
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| T |
34430725 |
aaaacttggtttcaaatctaccagcatttgaagaagatcacttcggaaaccatg |
34430672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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