View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2348_low_5 (Length: 486)
Name: NF2348_low_5
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 250 - 470
Target Start/End: Complemental strand, 3621031 - 3620811
Alignment:
| Q |
250 |
tggttttgagaattgaatgaactaacttccttatcaggggcacattcttcatcattacaatcagactcagaagaagctctaacaatgaacatgcatgaac |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621031 |
tggttttgagaattgaatgaactaacttccttatcaggggcacattcttcatcattacaatcagactcagaagaagctctaacaatgaacatgcatgaac |
3620932 |
T |
|
| Q |
350 |
ttctcttgttaatcttttgttgcttcaaggagaatttccttgttgaaaaggcacatgtgttggttgttatggtagcttgcaatgcacaagccattattgg |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3620931 |
ttctcttgttaatcttttgttgcttcaaggagaatttccttgttgaaaaggcacatgtgttggttgttatggtagcttgcaatgcacaagccattattgg |
3620832 |
T |
|
| Q |
450 |
taacaaatgaatgagtgtgtt |
470 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3620831 |
taacaaatgaatgagtgtgtt |
3620811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 10 - 193
Target Start/End: Complemental strand, 3621262 - 3621088
Alignment:
| Q |
10 |
atgaaaatataacaaaa-caatattcaaattgacctataatcaaattaaacaaaggtccaaaaccaatataaacaaacaccctttataagcaaagcatga |
108 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621262 |
atgaaaatataacaaaaacagtattcaaattgacctataatcaaattaaacaaaggtccaaaaccaatataaacaaacaccctttataagcaaagcatga |
3621163 |
T |
|
| Q |
109 |
tagctatgcttagcaacaatatgttttgctttgaacaaagttataatatatactatacctagttttccataattttctcaactac |
193 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3621162 |
tagct----------acaatatgttttgctttgaacaaagttataatatatactatacctagttttccataattttctcaactac |
3621088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University