View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2348_low_6 (Length: 469)
Name: NF2348_low_6
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 91 - 459
Target Start/End: Original strand, 34130355 - 34130746
Alignment:
| Q |
91 |
gctgaaaaccattaacatcattactattatattttctaattataa-tcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa |
189 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34130355 |
gctgaaacccattaacatcattactgttatattttctaattataactcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa |
34130454 |
T |
|
| Q |
190 |
gaggatgaggagcctgaaactactgccaataaaagagacagaagaaaattagaaattgacaattttatttacttcaaggctagggtgccacaaagaatga |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34130455 |
gaggatgaggagcctgaaactactgccaataaaagagacagaagaaaattagaaattgacaattttatttacttcaaggctagggtgccacaaagaatga |
34130554 |
T |
|
| Q |
290 |
tgtaatat----------------------tcattatttggagaggtggtgttaagaactttatgcacacattttgcataaatgatcaccttgtaaatta |
367 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34130555 |
tgtaatattcaattttggtttaatgtgatgtcattatttggagaggtggtgttaagaactttatgcacacattttgcataaatgatcaccttgtaaatta |
34130654 |
T |
|
| Q |
368 |
tataatcaatgcaaatatgcttgtgcacaaaaatcagttgcaccattgacttgtttgttctacatgtttagtgtatatagtatttgcctatg |
459 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34130655 |
tataatcaatgcaaatatgcttgcgcacaaaaatcagttgcaccattgacttgtttgttctacatgtttagtgtatatagtatttgcctatg |
34130746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34129705 - 34129759
Alignment:
| Q |
1 |
tttgtttttacctgaaataaagcttctgatgccttagttagggtaaagttttgaa |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34129705 |
tttgtttttacctgaaataaagcttctgatgccttagttagggtaatgttttgaa |
34129759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 34129778 - 34129813
Alignment:
| Q |
54 |
aatattttggagtgagggttttcctagaggaggttc |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
34129778 |
aatattttggagtgagggttttcctagaggaggttc |
34129813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 48559469 - 48559585
Alignment:
| Q |
139 |
tttctttggtccctgcagatggctttattataaactgagcagaaagttgaagaggatgaggagcctgaaactactgccaataaaagagac-agaagaaaa |
237 |
Q |
| |
|
||||||| ||| |||||| ||||||||||| || |||||||||||| |||||||| ||||| ||||||||||| | || ||||||| | ||||||||| |
|
|
| T |
48559469 |
tttcttttgtcactgcagctggctttattagaagctgagcagaaagctgaagaggctgaggggcctgaaactagtatgaagaaaagaggcaagaagaaaa |
48559568 |
T |
|
| Q |
238 |
ttagaaattgacaattt |
254 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
48559569 |
ctagaaattgataattt |
48559585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University