View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2348_low_7 (Length: 442)
Name: NF2348_low_7
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 5863578 - 5863961
Alignment:
| Q |
23 |
agataaagactttatatgtatggtggagagcagtagggtagggaagcaaaactggtggccaaagcaataaaggaaaataaattgacttaacataagaaaa |
122 |
Q |
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| T |
5863578 |
agataaagactttatctgtatggtggagagcagtagggtagggaagaaaaattggtggccaaagcaataaaggaaaataaattgacttaacataagaaaa |
5863677 |
T |
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| Q |
123 |
gaacatagcacttaaatattacaaaatgacaaaactatccacaaattaaggaccaatactaagtgataacagctatgaa---gatattgtcccttgataa |
219 |
Q |
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| T |
5863678 |
gaacatagcacttaaatattacaaaatgacaaaactatccacaaattaaggaccaatactaagtgataacagctatgaattagatattgtcccttgataa |
5863777 |
T |
|
| Q |
220 |
cagctaggtagataaataaatggcttctcatcttagttaggaccatatgcaatctttgatcaagtttaaactatatctcaaatagttttattttctgtct |
319 |
Q |
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|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5863778 |
cagctaggaagataaatatatggcttctcatcttagttaggaccatatgcaatctttgatcaagtttaaactatatctcaaatagttttattttctgtct |
5863877 |
T |
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| Q |
320 |
tttctaatattttgtctttgactataaatatcacaatatggtgaccatatagtcacggtcatgtaaacatgacaagcaataaaa |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5863878 |
tttctaatattttgtctttgactataaatatcacaatatggtgacaatatagtcacggtcatgtaaacatgacaagcaataaaa |
5863961 |
T |
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