View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2348_low_9 (Length: 386)
Name: NF2348_low_9
Description: NF2348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2348_low_9 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 20519834 - 20520148
Alignment:
| Q |
20 |
tcttctcaaaaaacgcaatcgcatcctcacatttcccatgcaacgcataacaattaatcatcgaattccatgaagtcaaccccttacgttgatccatctc |
119 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20519834 |
tcttctcaaaaaacgtaatcgcatcctcacatttcccatgcaacgcataacaattaatcatcgaattccatgaagtcaaccccttacgttgatccatctc |
20519933 |
T |
|
| Q |
120 |
aaaaaccttcctcgccacctccaaactcccacacttcccatacatatccacaagcgcattcgacacaaacgaatcaactacaaacccatgtctataaaca |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20519934 |
aaaaaccttcctcgccaactccaaactcccacacttcccatacatatccacaagcgcattcgacacaaacgaatcaactacaaacccatgtctataaaca |
20520033 |
T |
|
| Q |
220 |
taaccatgtatccatttcccaagctgaagcataccaccatgaccacaagccgaaagcacacaaacaaccgtaacctgattcggcttattccccttacaaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20520034 |
taaccatgtatccatttcccaagctgaagcataccaccatgaccacaagctgaaagcacacaaacaaccgtaacctgattcggcttattccccttacaaa |
20520133 |
T |
|
| Q |
320 |
acccaccctcaccca |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20520134 |
acccaccctcaccca |
20520148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University