View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2349_high_3 (Length: 290)

Name: NF2349_high_3
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2349_high_3
NF2349_high_3
[»] chr5 (12 HSPs)
chr5 (66-242)||(43141418-43141595)
chr5 (165-211)||(4391842-4391888)
chr5 (164-205)||(3456911-3456952)
chr5 (165-211)||(32891330-32891376)
chr5 (158-211)||(42148986-42149039)
chr5 (165-204)||(8692671-8692710)
chr5 (167-205)||(5481514-5481552)
chr5 (169-211)||(37093912-37093954)
chr5 (170-211)||(4392000-4392041)
chr5 (167-200)||(34286760-34286793)
chr5 (171-211)||(8692512-8692552)
chr5 (171-211)||(32891178-32891218)
[»] chr1 (18 HSPs)
chr1 (158-213)||(16255008-16255063)
chr1 (160-211)||(4624494-4624545)
chr1 (165-211)||(42480279-42480325)
chr1 (170-211)||(41647383-41647424)
chr1 (163-211)||(20809103-20809151)
chr1 (168-211)||(47550947-47550990)
chr1 (170-211)||(9098571-9098612)
chr1 (166-211)||(31032695-31032740)
chr1 (166-211)||(34476055-34476100)
chr1 (171-211)||(1270175-1270215)
chr1 (171-211)||(4194770-4194810)
chr1 (171-211)||(20808951-20808991)
chr1 (171-211)||(34475903-34475943)
chr1 (165-211)||(1270327-1270373)
chr1 (165-211)||(45010355-45010401)
chr1 (171-211)||(29095677-29095717)
chr1 (171-211)||(31032852-31032892)
chr1 (167-211)||(44714807-44714851)
[»] chr3 (10 HSPs)
chr3 (163-211)||(23642974-23643022)
chr3 (165-205)||(39145413-39145453)
chr3 (167-205)||(34624486-34624524)
chr3 (169-211)||(45166382-45166424)
chr3 (167-205)||(52546904-52546942)
chr3 (165-213)||(50612871-50612919)
chr3 (171-211)||(50613029-50613069)
chr3 (171-213)||(45166230-45166272)
chr3 (171-211)||(31788309-31788349)
chr3 (171-211)||(38176544-38176584)
[»] chr8 (13 HSPs)
chr8 (164-217)||(4824292-4824345)
chr8 (166-211)||(33889004-33889049)
chr8 (167-211)||(41322685-41322729)
chr8 (167-211)||(15561913-15561957)
chr8 (167-211)||(36473048-36473092)
chr8 (166-204)||(13357628-13357666)
chr8 (165-211)||(29314155-29314201)
chr8 (167-205)||(37919508-37919546)
chr8 (164-200)||(2001814-2001850)
chr8 (171-208)||(1196511-1196548)
chr8 (167-200)||(1416048-1416081)
chr8 (164-205)||(11653707-11653748)
chr8 (165-205)||(34392261-34392301)
[»] chr2 (14 HSPs)
chr2 (166-211)||(14940985-14941030)
chr2 (157-210)||(28429435-28429488)
chr2 (165-205)||(13686155-13686195)
chr2 (164-202)||(35676267-35676305)
chr2 (167-211)||(2752614-2752658)
chr2 (168-211)||(19899075-19899118)
chr2 (166-205)||(45093147-45093186)
chr2 (167-205)||(24413865-24413903)
chr2 (159-211)||(28716307-28716360)
chr2 (164-211)||(25415069-25415116)
chr2 (171-211)||(13685997-13686037)
chr2 (171-211)||(16058528-16058568)
chr2 (171-211)||(41464902-41464942)
chr2 (171-211)||(42263835-42263875)
[»] chr4 (16 HSPs)
chr4 (167-211)||(41633372-41633416)
chr4 (166-205)||(52726034-52726073)
chr4 (165-211)||(18375388-18375434)
chr4 (167-211)||(23348112-23348156)
chr4 (167-211)||(54358268-54358312)
chr4 (168-211)||(37674000-37674043)
chr4 (165-211)||(17847539-17847585)
chr4 (167-205)||(54021241-54021279)
chr4 (165-213)||(4512159-4512208)
chr4 (169-202)||(47282226-47282259)
chr4 (171-211)||(24683080-24683120)
chr4 (167-211)||(41497890-41497934)
chr4 (168-211)||(41878672-41878715)
chr4 (167-205)||(47838942-47838980)
chr4 (171-211)||(4098536-4098576)
chr4 (171-211)||(18375545-18375585)
[»] scaffold0339 (1 HSPs)
scaffold0339 (165-205)||(13404-13444)
[»] chr7 (4 HSPs)
chr7 (166-211)||(23991948-23991993)
chr7 (164-205)||(42195539-42195580)
chr7 (171-211)||(17611846-17611886)
chr7 (171-211)||(19479445-19479485)
[»] chr6 (3 HSPs)
chr6 (167-200)||(17366983-17367016)
chr6 (167-211)||(7646773-7646817)
chr6 (164-197)||(3835318-3835351)
[»] scaffold0002 (1 HSPs)
scaffold0002 (171-211)||(492670-492710)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 43141418 - 43141595
Alignment:
Q  66 attccaaaccaaaatatatataataacggtaagccataatagaagtattctaaaactagaaattgattctacgtgataatccaacatatctttttatgaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43141418 attccaaaccaaaatatatataataacggtaagccataatagaagtattctaaaactagaaattgattctacgtgataatccaacatatctttttatgaa 43141517  T
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaatat-aaaatcagaattgaattttaaatttcat 242  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43141518 aggaaaatgttatttctctagaaaaatagcatcaagaattcttcaatataaaaatcagaattgaattttaaatttcat 43141595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 4391842 - 4391888
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  4391842 aaggaaaatgcaatttctctagaaaaatagcatcaagaatttttcaa 4391888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 3456952 - 3456911
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  3456952 aaaggaaaatgctatttttctagaaaaatagcatcaagaatt 3456911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 32891376 - 32891330
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||||    
T  32891376 aaggaaaatgctatttatctagaaaaatagcatcaacaatttttcaa 32891330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 42149039 - 42148986
Alignment:
Q  158 tttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||||| |||||    
T  42149039 tttatgattggaaaacgctatttctctagaaaaatagtatcaagaatttttcaa 42148986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 204
Target Start/End: Complemental strand, 8692710 - 8692671
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaat 204  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  8692710 aaggaaaatgttatttctctaaaaaaatagcatcaagaat 8692671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 5481552 - 5481514
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  5481552 ggaaaatattatttctctagaaaaatagcatcaagaatt 5481514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 37093912 - 37093954
Alignment:
Q  169 aaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||| ||||| |||||||||||||||||||||||| |||||    
T  37093912 aaaatgttatttttctagaaaaatagcatcaagaatttttcaa 37093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 4392041 - 4392000
Alignment:
Q  170 aaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||| ||| |||||||||||||| |||||||||||||||||    
T  4392041 aaatgttatatctctagaaaaataacatcaagaattcttcaa 4392000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 34286793 - 34286760
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaa 200  Q
    |||||||| |||||||||||||||||||||||||    
T  34286793 ggaaaatgttatttctctagaaaaatagcatcaa 34286760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 8692512 - 8692552
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  8692512 aatgttatatctctagaaaaataacatcaagaattcttcaa 8692552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 32891178 - 32891218
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  32891178 aatgttatatctctagaaaaataacatcaagaattcttcaa 32891218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 16255063 - 16255008
Alignment:
Q  158 tttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaata 213  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16255063 tttataaaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaata 16255008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 4624545 - 4624494
Alignment:
Q  160 tatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  4624545 tatggaaggaaaatgctatttctctagaaaaatagcatcaagaattattcaa 4624494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 42480325 - 42480279
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  42480325 aaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 42480279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 41647424 - 41647383
Alignment:
Q  170 aaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  41647424 aaatgctatttctctagaaaaatagcatcaagaatttttcaa 41647383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 20809151 - 20809103
Alignment:
Q  163 gaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||    
T  20809151 gaaaggaaaattttatttctctagaaaaatagcatcaagaatttttcaa 20809103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 47550990 - 47550947
Alignment:
Q  168 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  47550990 gaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 47550947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 9098571 - 9098612
Alignment:
Q  170 aaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  9098571 aaatgctttttctctagaaaaatagcatcaagaatttttcaa 9098612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 31032695 - 31032740
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||    
T  31032695 aggaaaatgttatttttctagaaaaatagcatcaagaatttttcaa 31032740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 34476100 - 34476055
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  34476100 aggaaaaggctatttctctagaaaaatagtatcaagaatttttcaa 34476055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 1270175 - 1270215
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  1270175 aatgctatatctctagaaaaataacatcaagaattcttcaa 1270215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 4194770 - 4194810
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  4194770 aatgctatatctctagaaaaataacatcaagaattcttcaa 4194810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 20808951 - 20808991
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  20808951 aatgctatatctctagaaaaataacatcaagaattcttcaa 20808991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 34475903 - 34475943
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  34475903 aatgctatatctctagaaaaataacatcaagaattcttcaa 34475943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 1270373 - 1270327
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||| | |||||||||||||||||||||||||| |||| |||||    
T  1270373 aaggaaactactatttctctagaaaaatagcatcaaaaatttttcaa 1270327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 45010401 - 45010355
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||| ||| |||||||||||||||||||||| ||||||| |||||    
T  45010401 aaggaagatgttatttctctagaaaaatagcataaagaatttttcaa 45010355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 29095717 - 29095677
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  29095717 aatgttatatctctagaaaaataacatcaagaattcttcaa 29095677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 31032892 - 31032852
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  31032892 aatgttatatctctagaaaaatatcatcaagaattcttcaa 31032852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 44714807 - 44714851
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| ||||| ||||||||||||| |||||||||| |||||    
T  44714807 ggaaaatgttatttttctagaaaaatagtatcaagaatttttcaa 44714851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 23642974 - 23643022
Alignment:
Q  163 gaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23642974 gaaaggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 23643022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 39145453 - 39145413
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39145453 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 39145413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 34624486 - 34624524
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  34624486 ggaaaatgttatttctctagaaaaatagcatcaagaatt 34624524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 45166424 - 45166382
Alignment:
Q  169 aaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  45166424 aaaatgttatttctctagaaaaatagcatcaagaatttttcaa 45166382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 52546942 - 52546904
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  52546942 ggaaaatgctatttctctagaaaaattgcatcaagaatt 52546904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 50612871 - 50612919
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaata 213  Q
    |||||||||| |||||||||| ||||| ||||||||||||| |||||||    
T  50612871 aaggaaaatgttatttctctataaaaacagcatcaagaatttttcaata 50612919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 50613069 - 50613029
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  50613069 aatgctatatctctagaaaaataacatcaagaattcttcaa 50613029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 45166230 - 45166272
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaata 213  Q
    |||| ||| |||||||||||||| |||||||||||||||||||    
T  45166230 aatgttatatctctagaaaaataacatcaagaattcttcaata 45166272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 31788309 - 31788349
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  31788309 aatgatatatctctagaaaaataacatcaagaattcttcaa 31788349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 38176584 - 38176544
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  38176584 aatgttatatctctagaaaaatatcatcaagaattcttcaa 38176544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 4824345 - 4824292
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaatataaa 217  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||    
T  4824345 aaaggaaaatgctatttctctagaaaaatagcattaagaatttttcaagataaa 4824292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 33889049 - 33889004
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  33889049 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 33889004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 41322729 - 41322685
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  41322729 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 41322685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 15561913 - 15561957
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  15561913 ggaaaatgctatttatctagaaaaatagcatcaagaatttttcaa 15561957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 36473048 - 36473092
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||    
T  36473048 ggaaaatgctatttctctagaaaaataacatcaagaatttttcaa 36473092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 13357628 - 13357666
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaat 204  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  13357628 aggaaaatgctatttatctagaaaaatagcatcaagaat 13357666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 29314201 - 29314155
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||||||||| |||||||| |||||||||| |||||    
T  29314201 aaggaaaatgctatttctctaaaaaaatagtatcaagaatttttcaa 29314155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 37919508 - 37919546
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  37919508 ggaaaatgctatttctctagaaaaatagtatcaagaatt 37919546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 2001850 - 2001814
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaa 200  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2001850 aaaggaaaatgttatttctctagaaaaatagcatcaa 2001814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 1196511 - 1196548
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattctt 208  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  1196511 aatgctatatctctagaaaaataacatcaagaattctt 1196548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 1416048 - 1416081
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaa 200  Q
    |||||||| |||||||||||||||||||||||||    
T  1416048 ggaaaatgttatttctctagaaaaatagcatcaa 1416081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 11653707 - 11653748
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||| ||||||||||||||||| ||||||| |||||||||||    
T  11653707 aaagcaaaatgctatttctctacaaaaataacatcaagaatt 11653748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 34392301 - 34392261
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    ||||||||||||||||||||| |||||||| || |||||||    
T  34392301 aaggaaaatgctatttctctaaaaaaatagaattaagaatt 34392261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 14940985 - 14941030
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  14940985 aggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 14941030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 28429488 - 28429435
Alignment:
Q  157 ttttatgaaaggaaaatgctatttctctagaaaaatagcatcaagaattcttca 210  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  28429488 ttttattaaaggaaaatgctatttctttagaaaaatagcatcaagaatttttca 28429435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 13686195 - 13686155
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13686195 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 13686155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 202
Target Start/End: Original strand, 35676267 - 35676305
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaaga 202  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35676267 aaaggaaaatgctatttctctagaaaaatagcatcaaga 35676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 2752614 - 2752658
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||    
T  2752614 ggaaattgctatttctctagaaaaatagcatcaagaatttttcaa 2752658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 19899118 - 19899075
Alignment:
Q  168 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||||||||||| ||||| |||||    
T  19899118 gaaaatgctatttctctagaaaaatagcatcacgaatttttcaa 19899075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 45093147 - 45093186
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  45093147 aggaaaatgttatttctctagaaaaatagcatcaagaatt 45093186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 24413903 - 24413865
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  24413903 ggaaaatgctatttctctagaaaaatagcatcaataatt 24413865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 28716307 - 28716360
Alignment:
Q  159 ttatgaaagg-aaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||| |||||    
T  28716307 ttatgaaagggaaaatgttatttttctagaaaaatagcatcaagaatttttcaa 28716360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 25415116 - 25415069
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||| ||||||||||||||| || ||||||| |||||    
T  25415116 aaaggaaaatgctatatctctagaaaaatagtataaagaatttttcaa 25415069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 13685997 - 13686037
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| ||||||||||| |||||    
T  13685997 aatgctatatctctagaaaaataacatcaagaatttttcaa 13686037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 16058568 - 16058528
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| ||| |||||||||||||    
T  16058568 aatgctatatctctagaaaaataacattaagaattcttcaa 16058528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 41464902 - 41464942
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  41464902 aatgttatttctctagaaaaataacatcaagaatttttcaa 41464942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 42263835 - 42263875
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  42263835 aatgttatatctctagaaaaataacatcaagaattcttcaa 42263875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 41633416 - 41633372
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    
T  41633416 ggaaaatgctatttctctagaaaaatagcatcaagaatttttcaa 41633372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 52726073 - 52726034
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  52726073 aggaaaatgctatttctctagaaaaatagcatcaagaatt 52726034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 18375388 - 18375434
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||    
T  18375388 aaggaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 18375434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 23348112 - 23348156
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||||||||||||| |||| |||||    
T  23348112 ggaaaatgctatttctctagaaaaatagcatcaataatttttcaa 23348156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 54358312 - 54358268
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||||||||||||||||||| |||||    
T  54358312 ggaaaatgttatttctctagaaaaatagcatcaagaatttttcaa 54358268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 37674000 - 37674043
Alignment:
Q  168 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||| |||||||||||||||||||||||||||||| |||||    
T  37674000 gaaaatgatatttctctagaaaaatagcatcaagaatttttcaa 37674043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 17847539 - 17847585
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||| ||||||||| |||||||||||||||||||| |||||    
T  17847539 aaggaaaatgttatttctctcgaaaaatagcatcaagaatttttcaa 17847585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 54021241 - 54021279
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  54021241 ggaaaatgttatttctctagaaaaatagcatcaagaatt 54021279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 4512159 - 4512208
Alignment:
Q  165 aaggaaaatgctatttctctag-aaaaatagcatcaagaattcttcaata 213  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  4512159 aaggaaaatgttatttctctagaaaaaatagcatcaagaatttttcaata 4512208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 47282259 - 47282226
Alignment:
Q  169 aaaatgctatttctctagaaaaatagcatcaaga 202  Q
    ||||||||||||||||||||||||||||||||||    
T  47282259 aaaatgctatttctctagaaaaatagcatcaaga 47282226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 24683080 - 24683120
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  24683080 aatgctatatctctagaaaaataacatcaagaattcttcaa 24683120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 41497890 - 41497934
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||    
T  41497890 ggaaaatgctatttctctaaaaaaatagcatcaaaaattattcaa 41497934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 41878715 - 41878672
Alignment:
Q  168 gaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    ||||||||||||| | |||||||||||||||||||||| |||||    
T  41878715 gaaaatgctatttatttagaaaaatagcatcaagaatttttcaa 41878672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 47838942 - 47838980
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  47838942 ggaacatgctatttctctataaaaatagcatcaagaatt 47838980  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 4098576 - 4098536
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  4098576 aatgttatatctctagaaaaataacatcaagaattcttcaa 4098536  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 18375585 - 18375545
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  18375585 aatgttatatctctagaaaaataacatcaagaattcttcaa 18375545  T

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Target: scaffold0339 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 13444 - 13404
Alignment:
Q  165 aaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  13444 aaggaaaatgatatttctctagaaaaatagcatcaagaatt 13404  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 23991948 - 23991993
Alignment:
Q  166 aggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||    
T  23991948 aggaaaatgctatttctctagaaacatagtatcaagaatttttcaa 23991993  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 42195580 - 42195539
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcatcaagaatt 205  Q
    ||||||||||| |||||||||||||||||| |||||||||||    
T  42195580 aaaggaaaatgttatttctctagaaaaataacatcaagaatt 42195539  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 17611846 - 17611886
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| || ||||||||||| |||||||||||||||||    
T  17611846 aatgctatatcgctagaaaaataacatcaagaattcttcaa 17611886  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 19479445 - 19479485
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||| |||||||||||||| |||||| ||||||||||    
T  19479445 aatgctatatctctagaaaaataacatcaaaaattcttcaa 19479485  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 17367016 - 17366983
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaa 200  Q
    ||||||||||||||||||||||||||||||||||    
T  17367016 ggaaaatgctatttctctagaaaaatagcatcaa 17366983  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 7646773 - 7646817
Alignment:
Q  167 ggaaaatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||    
T  7646773 ggaaaatgctatttctctagaaaaatagtatcaggaatttttcaa 7646817  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 3835351 - 3835318
Alignment:
Q  164 aaaggaaaatgctatttctctagaaaaatagcat 197  Q
    ||||||||||| ||||||||||||||||||||||    
T  3835351 aaaggaaaatgttatttctctagaaaaatagcat 3835318  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 492670 - 492710
Alignment:
Q  171 aatgctatttctctagaaaaatagcatcaagaattcttcaa 211  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  492670 aatgttatatctctagaaaaataacatcaagaattcttcaa 492710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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