View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2349_low_11 (Length: 283)
Name: NF2349_low_11
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2349_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 65 - 268
Target Start/End: Complemental strand, 4646602 - 4646399
Alignment:
| Q |
65 |
tctttagttttcatactctaactttgcattttgttttactttttgtatatatatgctatttaacacatatatataatgaattgatagggtggaaccatac |
164 |
Q |
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| T |
4646602 |
tctttagttttcatactctaactttgcattttgttttactttttgtatatatatgctatttaacacatatatataatgaattgatagggtggaaccatac |
4646503 |
T |
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| Q |
165 |
aatgatacattatttaatcaatgggttgatcttggaacagccccagcacttcctgaatctgaaaaattgtacaataaattgttgtctcttggcatcaaga |
264 |
Q |
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| T |
4646502 |
aatgatacattatttaatcaatgggttgatcttggaacagcaccagcacttcctgaatctaaaaaattgtacaataaattgttgtctcttggtatcaaga |
4646403 |
T |
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| Q |
265 |
ttgc |
268 |
Q |
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|||| |
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| T |
4646402 |
ttgc |
4646399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 34899975 - 34899909
Alignment:
| Q |
7 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagtt |
73 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctctctttagtt |
34899909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 146 - 272
Target Start/End: Complemental strand, 41872765 - 41872639
Alignment:
| Q |
146 |
tgatagggtggaaccatacaatgatacattatttaatcaatgggttgatcttggaacagccccagcacttcctgaatctgaaaaattgtacaataaattg |
245 |
Q |
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| T |
41872765 |
tgatagggtggaaccattcaatgcgacgtcgtttaatgaatgggcagaccttggcacagcaccagcactgccagaatctcaaaaactttacaataaacta |
41872666 |
T |
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| Q |
246 |
ttgtctcttggcatcaagattgcattc |
272 |
Q |
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| T |
41872665 |
ttgtctcttggtatcaagattgtattc |
41872639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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