View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2349_low_12 (Length: 251)

Name: NF2349_low_12

Description: NF2349

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2349_low_12

[»] chr7 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 125; E-Value: 2e-64

Query Start/End: Original strand, 8 - 151

Target Start/End: Original strand, 44742407 - 44742551

Alignment:

Q	8	ccaacaatatacaaaaaactgataatacttgatatccttcaattgaatcactccaacctgtatccaaagaaaacttcaaataattaagatttgta-acag	106	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|
T	44742407	ccaacaaaatacaaaaaactgataatacttgatatccttcaattgaatcactccaacctgtatccaaagaaaacttcaaataattaagatttgcacccag	44742506	T

Q	107	caaatcaaaatacaataaaccattaaattcaacaataatggttcc	151	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	44742507	caaatcaaaatacaataaaccattaaattcaacaataatggttcc	44742551	T

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Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 91; E-Value: 3e-44

Query Start/End: Original strand, 8 - 151

Target Start/End: Original strand, 53238323 - 53238458

Alignment:

Q	8	ccaacaatatacaaaaaactgataatacttgatatccttcaattgaatcactccaacctgtatccaaagaaaacttcaaataattaagatttgtaacagc	107	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|
T	53238323	ccaacaaaatacaaaaaactgataatacttgatatccttcaattgaatcactccaacctgtatccaaagaaaatttcaattaattaagacttgtaccaga	53238422	T

Q	108	aaatcaaaatacaataaaccattaaattcaacaataatggttcc	151	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	53238423	aaatcaa--------aaaccattaaattcaacaataatggttcc	53238458	T

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