View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2349_low_2 (Length: 438)
Name: NF2349_low_2
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2349_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 23 - 411
Target Start/End: Complemental strand, 9934616 - 9934228
Alignment:
| Q |
23 |
atcatcaacgttagagatgaggtagttctgctttgtgataggtctcgtaacttcaataactggggtttcttgaaatgcatttgtacccatcaagctccgt |
122 |
Q |
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| T |
9934616 |
atcatcaacgttagagatgaggtagttctgctttgtgattggtctcgtaacttcaataactggggtttcttgaaatgcatttgtacccatcaagctccgt |
9934517 |
T |
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| Q |
123 |
cgaacttgaccagtgatagcgatgagtgggacactatccatcatagcatcagcgaggccactgattaagttagtagcacccggaccggaggtggctatgc |
222 |
Q |
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| T |
9934516 |
cgaacttgaccagtgatagcgatgagtgggacactatccatcatagcgtcggcgaggccactgattaagttagtagcacccggaccggaggtggctatgc |
9934417 |
T |
|
| Q |
223 |
aaacaccagggatactggaggagcgagcgtaaccctcagccgcgaatattccaccttgttcgtggcggggaagtatgtttcggattgttttagagcgggt |
322 |
Q |
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| T |
9934416 |
aaacaccagggatactggaggagcgagcgtaaccctcagccgcgaatattccaccttgttcgtggcggggaagtatgtttcgaattgttttggagcgggt |
9934317 |
T |
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| Q |
323 |
tagagcttggtggatctctgcggaagcaccgccagggtaagcgaagacggtggttatgccttgacgctcaagtgcttcaacgagaatat |
411 |
Q |
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| T |
9934316 |
tagagcttggtggatctctgcggaagcaccgccagggtaagcgaagacggtggttatgccttgacgctcaagtgcttcaacgagaatat |
9934228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 286
Target Start/End: Complemental strand, 3471979 - 3471780
Alignment:
| Q |
87 |
gtttcttgaaatgcatttgtacccatcaagctccgtcgaacttgaccagtgatagcgatgagtgggacactatccatcatagcatcagcgaggccactga |
186 |
Q |
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| T |
3471979 |
gtttcttgaaaagcatcagtaccaatcattctccggggaacctgaccggtgatagcaataagcggaacactgtcaagcatagcatcagcaagtccactga |
3471880 |
T |
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| Q |
187 |
ttaagttagtagcacccggaccggaggtggctatgcaaacaccagggatactggaggagcgagcgtaaccctcagccgcgaatattccaccttgttcgtg |
286 |
Q |
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| T |
3471879 |
caagattagtggcaccagggccggaagtggcgatgcagacaccaggtagaccagaggaacgagcgtaaccctcggcagcgaagattccaccttgttcgtg |
3471780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 39 - 409
Target Start/End: Complemental strand, 45476549 - 45476179
Alignment:
| Q |
39 |
atgaggtagttctgctttgtgataggtctcgtaacttcaataactggggtttcttgaaatgcatttgtacccatcaagctccgtcgaacttgaccagtga |
138 |
Q |
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||||| ||||| ||||||||||||| |||||| ||||||| | || ||||||||||| |||| || || |||| ||||| |||||||||| || | |
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| T |
45476549 |
atgagatagttatgctttgtgatagatctcgttacttcaactataggtgtttcttgaaaagcatcagttccgatcattctccggggaacttgaccggtaa |
45476450 |
T |
|
| Q |
139 |
tagcgatgagtgggacactatccatcatagcatcagcgaggccactgattaagttagtagcacccggaccggaggtggctatgcaaacaccagggatact |
238 |
Q |
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|||||||||| |||||||| ||||||| |||||| |||||||| |||| |||||| || ||||| ||||| |||||||| || ||||| || || | || |
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| T |
45476449 |
tagcgatgagagggacactgtccatcaaagcatcggcgaggccgctgactaagttggtggcaccgggaccagaggtggcgatacaaacgccgggaagacc |
45476350 |
T |
|
| Q |
239 |
ggaggagcgagcgtaaccctcagccgcgaatattccaccttgttcgtggcggggaagtatgtttcggattgttttagagcgggttagagcttggtggatc |
338 |
Q |
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||||||||||||||| || || || ||||| | |||||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||||||||||||||| |
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| T |
45476349 |
ggaggagcgagcgtagccttcggcggcgaagacaccaccttgttcgtgacgggggagtatgttacggatggttttggaacgggtgagagcttggtggatc |
45476250 |
T |
|
| Q |
339 |
tctgcggaagcaccgccagggtaagcgaagacggtggttatgccttgacgctcaagtgcttcaacgagaat |
409 |
Q |
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|| |||||| ||||||||||||||||||||| |||| | ||||| || || | |||||||||||||| |
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| T |
45476249 |
tccatggaagcgccgccagggtaagcgaagacgttggtaacgccttcgcgttctaaggcttcaacgagaat |
45476179 |
T |
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