View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2349_low_3 (Length: 432)

Name: NF2349_low_3
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2349_low_3
NF2349_low_3
[»] chr4 (4 HSPs)
chr4 (228-402)||(8570012-8570186)
chr4 (228-402)||(54189027-54189201)
chr4 (33-166)||(54189263-54189396)
chr4 (34-166)||(8569817-8569950)
[»] chr3 (2 HSPs)
chr3 (228-402)||(28695972-28696146)
chr3 (33-163)||(28695777-28695908)
[»] chr7 (4 HSPs)
chr7 (228-402)||(3368120-3368291)
chr7 (228-398)||(9891773-9891946)
chr7 (34-96)||(24511458-24511520)
chr7 (33-96)||(25035900-25035963)
[»] chr5 (2 HSPs)
chr5 (35-87)||(17039399-17039451)
chr5 (34-96)||(14417581-14417644)
[»] chr1 (1 HSPs)
chr1 (40-87)||(43532021-43532068)
[»] scaffold0957 (1 HSPs)
scaffold0957 (33-76)||(3069-3112)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 228 - 402
Target Start/End: Original strand, 8570012 - 8570186
Alignment:
Q  228 cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca 327  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8570012 cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca 8570111  T
Q  328 tcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct 402  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8570112 tcagtttcatttcaatcacactcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct 8570186  T

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Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 228 - 402
Target Start/End: Complemental strand, 54189201 - 54189027
Alignment:
Q  228 cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca 327  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  54189201 cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatagctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca 54189102  T
Q  328 tcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  54189101 tcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct 54189027  T

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Target: chr4; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 54189396 - 54189263
Alignment:
Q  33 acactactacacttatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattattttcaatattataaaaataac 132  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  54189396 acactacgacacatataaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattattttcaatattataaaaataat 54189297  T
Q  133 atttaaactatagttttatttcacccaaaaaagg 166  Q
    |||||||||| |||||||||||||||||||||||    
T  54189296 atttaaactacagttttatttcacccaaaaaagg 54189263  T

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Target: chr4; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 34 - 166
Target Start/End: Original strand, 8569817 - 8569950
Alignment:
Q  34 cactactacacttatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaatta-ttttcaatattataaaaataac 132  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8569817 cactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattatttttcaatattataaaaataac 8569916  T
Q  133 atttaaactatagttttatttcacccaaaaaagg 166  Q
    |||||||||  || |||||||||||| |||||||    
T  8569917 atttaaacttcagatttatttcacccgaaaaagg 8569950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 228 - 402
Target Start/End: Original strand, 28695972 - 28696146
Alignment:
Q  228 cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca 327  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28695972 cagatatctctctcatagaatcacttttctcagaagggctttatcccaaaatcgctttgtcaaaattgcttaatcaaaatctcttcatgacatctcctca 28696071  T
Q  328 tcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct 402  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28696072 tcagtttcatttcaatcacactcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct 28696146  T

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Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 33 - 163
Target Start/End: Original strand, 28695777 - 28695908
Alignment:
Q  33 acactactacacttatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaatta-ttttcaatattataaaaataa 131  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28695777 acactactacacatatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacatcactacaacaattatttttcaatattataaaaataa 28695876  T
Q  132 catttaaactatagttttatttcacccaaaaa 163  Q
    ||||||||||  || ||||||||||| |||||    
T  28695877 catttaaacttcagatttatttcaccaaaaaa 28695908  T

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Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 228 - 402
Target Start/End: Complemental strand, 3368291 - 3368120
Alignment:
Q  228 cagatatctctctcatagaatcacttttctcataagggctttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca 327  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  3368291 cagatatctctctcatagaatcacttttct---aagggctttatcccaaaatagtttagtcaaaattgcttaatcaaaatctcttcatgacatctcctca 3368195  T
Q  328 tcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattgttct 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3368194 tcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcatcgaaattgttct 3368120  T

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Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 228 - 398
Target Start/End: Complemental strand, 9891946 - 9891773
Alignment:
Q  228 cagatatctctctcatagaatcacttttctcataagggc---tttatcccaaaatcgcttagtcaaaattgcttaatcaaaatctcttcatgacatctcc 324  Q
    ||||||||||||||||  ||||| |||||||| ||| ||   ||||||||||   |||||||||||||| |||||||||||||| ||||||||||||       
T  9891946 cagatatctctctcatcaaatcatttttctcagaagcgccgctttatcccaattacgcttagtcaaaatcgcttaatcaaaatcgcttcatgacatcatt 9891847  T
Q  325 tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcctcttcgcaatcccttcattgaaattg 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||    
T  9891846 tcatcagtttcatttcaatcactctcacatcttcatcacaatcgctcttcttcacaatcccttcatcgaaattg 9891773  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 24511520 - 24511458
Alignment:
Q  34 cactactacacttatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 96  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24511520 cactactacacatatgaccttttgcaacatattatatgtgacattttttaaaaagtgttacat 24511458  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 25035963 - 25035900
Alignment:
Q  33 acactactacacttatgaccttttgcaacatcttatatgtgacattttttaaaaagtgttacat 96  Q
    |||||||||| | |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  25035963 acactactacgcatatgactttttgcaacatcttatatgtgacattttttagaaagtgttacat 25035900  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 17039451 - 17039399
Alignment:
Q  35 actactacacttatgaccttttgcaacatcttatatgtgacattttttaaaaa 87  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  17039451 actactacacatatgaccttttgcaacatcttatatgtgacatattttaaaaa 17039399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 14417644 - 14417581
Alignment:
Q  34 cactactacacttatgaccttttgcaacatcttatatgtgacatt-ttttaaaaagtgttacat 96  Q
    ||||||||||| |||||  |||||||||||||| ||||||||||| ||||||||||||||||||    
T  14417644 cactactacacatatgaagttttgcaacatcttttatgtgacatttttttaaaaagtgttacat 14417581  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 43532068 - 43532021
Alignment:
Q  40 tacacttatgaccttttgcaacatcttatatgtgacattttttaaaaa 87  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||    
T  43532068 tacacgtatgactttttgcaacatcttatatgtgacattttataaaaa 43532021  T

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Target: scaffold0957 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 3069 - 3112
Alignment:
Q  33 acactactacacttatgaccttttgcaacatcttatatgtgaca 76  Q
    |||||||||||| || ||| ||||||||||||||||||||||||    
T  3069 acactactacacataagacattttgcaacatcttatatgtgaca 3112  T

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