View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2349_low_4 (Length: 425)
Name: NF2349_low_4
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2349_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 49 - 326
Target Start/End: Original strand, 33182992 - 33183259
Alignment:
| Q |
49 |
catataaacacatactccttaacctacaaatatgattcaactatgataaacaacttattcttgacatgagagtattgaaagcgcaagaaaacacaagaaa |
148 |
Q |
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| T |
33182992 |
catatacacatatactccttaacctacaaatatgattcaactatgataaacaacttattcttgatctcagagtattgaaagc----------acaagaaa |
33183081 |
T |
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| Q |
149 |
cgaggat-ctcgaatatattttgtagacttgacttttaaaatattgtttaaaccttcataacttttgactgaattacctttct-aaaagagagtatttga |
246 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
33183082 |
cgaggattctcgaatatattttgtaaacttgacttttaaaatattgtttaaaccttcataacttttgaccgaattacctttctaaaaagagagtatttga |
33183181 |
T |
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| Q |
247 |
tagtaacaaattcaaagagcggaannnnnnnnnnnncatatcttgagatgccacctctaacattcaaactcaacggaaca |
326 |
Q |
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| T |
33183182 |
tagtaacaaattcaaagagcggga--acacacacaccatatcttgagatgccacctctaacattcaaactcaacggaaca |
33183259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 33183261 - 33183328
Alignment:
| Q |
358 |
ccattccaaagaatactaaacaatgacatcatcatgatgtagttgcaaatagtaataaaaatgttctt |
425 |
Q |
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| T |
33183261 |
ccattccaaagaatactaaacaatgacatcatcatgatgtagttgcaaatagtaataaaaatgttctt |
33183328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 268
Target Start/End: Original strand, 23360456 - 23360678
Alignment:
| Q |
49 |
catataaacacatactccttaacctacaaatatgattcaactatgataaacaacttattcttgacatgagagtattgaaagcgcaagaaaacacaagaaa |
148 |
Q |
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| T |
23360456 |
catatacacacatactccttgacccacaaatatgatcaaactatcataagcaacttattcttgtcctcgaagtattgaaagcgtgagaaaacacaagaaa |
23360555 |
T |
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| Q |
149 |
cgaggat-ctcgaatatattttgtagacttgacttttaaaatattgtttaaaccttcataacttttgactgaattacc-tttctaaaagagagta-tttg |
245 |
Q |
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|| ||| ||||| ||||||||||| ||||||||||||||||||||||||| |||| || |||||||| | |||||| ||| ||||||||||| |||| |
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| T |
23360556 |
tgatgattctcgattatattttgtaaacttgacttttaaaatattgtttaatcctttatgtcttttgacaggattaccattttaaaaagagagtattttg |
23360655 |
T |
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| Q |
246 |
atagtaacaaattcaaagagcgg |
268 |
Q |
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||||||||||||||||||||||| |
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| T |
23360656 |
atagtaacaaattcaaagagcgg |
23360678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 23590474 - 23590376
Alignment:
| Q |
49 |
catataaacacatactccttaacctacaaatatgattcaactatgataaacaacttattcttgacatgagagtattgaaagcgcaagaaaacacaagaaa |
148 |
Q |
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|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||| |
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| T |
23590474 |
catatatacacaaactccttaacctacaaatatgatg-aactatgataaacaacttattcttgacctttgagtattgatggcgcaagaaaacacaagaaa |
23590376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 34899975 - 34899921
Alignment:
| Q |
7 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacat |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacat |
34899921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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