View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2349_low_5 (Length: 387)
Name: NF2349_low_5
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2349_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 47 - 314
Target Start/End: Complemental strand, 9011421 - 9011146
Alignment:
| Q |
47 |
ctactctccctttgaagttatgtaatagtatttatttttatgt--tatgtcaaactattatatat----ttcaataagttgttggtgtaaatcgtatttt |
140 |
Q |
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| T |
9011421 |
ctactctccctttgaagttatgtaatagtatttatttttttgtgttatgtcaaactattatatatatatttcaataagttgttggtgtaaatcgtatttt |
9011322 |
T |
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| Q |
141 |
tattgctactttatttgttttataaattatttagatttctacccnnnnnnnnnaaattatcaacggtatctttttattcataatagttgttaaatttgtt |
240 |
Q |
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| T |
9011321 |
tattgctactttatttgttttaaaaattatttagatttctacccttttttttt-aattatcaacgttatctttttattcataatagttgttaaatttgtt |
9011223 |
T |
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| Q |
241 |
ttgcaaaaggtagtttggtgagattaaaaaagagagaaattctatattttagtgctt---tacgggttaatttaaaa |
314 |
Q |
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| T |
9011222 |
ttgcaaaaggtagtttggtgagattaaaaaagagagaaattctatattttagtgctttagtacgggttaatttaaaa |
9011146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 34899917 - 34899975
Alignment:
| Q |
323 |
agagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
381 |
Q |
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| T |
34899917 |
agagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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