View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2349_low_6 (Length: 368)
Name: NF2349_low_6
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2349_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 212
Target Start/End: Original strand, 9887182 - 9887306
Alignment:
| Q |
91 |
ttgataagttattgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcc |
190 |
Q |
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| T |
9887182 |
ttgataagttattgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgtgattcaatcc |
9887281 |
T |
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| Q |
191 |
cagg---ttaacttcatcttctcgc |
212 |
Q |
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|||| |||||||||||||||||| |
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| T |
9887282 |
caggtaattaacttcatcttctcgc |
9887306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 94
Target Start/End: Original strand, 9887031 - 9887120
Alignment:
| Q |
5 |
aaggttcatattcttccacacccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattcaagtctttgttga |
94 |
Q |
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| T |
9887031 |
aaggttcatattctttcacacccattgatttcaacaaatttaaagattgcacaatcttttcatcccttggcatattcaagtctttgttga |
9887120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 9886988 - 9886915
Alignment:
| Q |
102 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaag |
175 |
Q |
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| T |
9886988 |
ttgatgtgttaacagatgcccaagtgtattcagagcatgctagcaagtctgcaattgatattcatgatgttaag |
9886915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9887154 - 9887117
Alignment:
| Q |
1 |
acacaaggttcatattcttccacacccattgatttcaa |
38 |
Q |
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| T |
9887154 |
acacaaggttcatattcttccacacctattgacttcaa |
9887117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 50747468 - 50747576
Alignment:
| Q |
102 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcccaggttaactt |
201 |
Q |
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| T |
50747468 |
ttgatgtgttaacagatgcccaggtgtattcagagcatgctggcaagcctgcaattgatgttgatgatgttaagctggccattcaatcccaggtcaactt |
50747567 |
T |
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| Q |
202 |
catcttctc |
210 |
Q |
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| T |
50747568 |
cagcttctc |
50747576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 50747429 - 50747355
Alignment:
| Q |
1 |
acacaaggttcatattcttccacacccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattc |
81 |
Q |
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| T |
50747429 |
acacgaggttcatattcttccacacccattgatttcaa------caaagactgcataatctttgcatcccttggcatattc |
50747355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 4328604 - 4328496
Alignment:
| Q |
102 |
ttgatgtgttaacagacactcaagtttatttagagcatgctagcaagtctgcaattgatattcattatgttaagcttgcgattcaatcccaggttaactt |
201 |
Q |
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| T |
4328604 |
ttgatgtgttaacagatgcccaggtgtattcagagcatgctggcaagcctgcaattgatgttgatgatgttaagctggccattcaatcccaggtcaactt |
4328505 |
T |
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| Q |
202 |
catcttctc |
210 |
Q |
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| T |
4328504 |
cagcttctc |
4328496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4328643 - 4328717
Alignment:
| Q |
1 |
acacaaggttcatattcttccacacccattgatttcaataaatttaaagattgcacaatctttgcatcccttggcatattc |
81 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
4328643 |
acacgaggttcatattcttccacacccattgatttcaa------caaagactgcacaatctttgcatcccttggcatattc |
4328717 |
T |
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